Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211963g00002 ATGAGACCCGTGTTTTGTGGAAACCTCGACTTCGACGCTCGTCAATCTGATGTTGAGAGGCTCTTCAAAAGATATGGGAAGGTTGAAAGAGTGGATATGAAATCTGGGTTTGCTTTCATCTACATGGAAGATGAAAGGGATGCTGAGTATGCAATCAGAAGACTTGATAGAACTGAATTTGGAAGAAAGGGGCGCCGTATACGTGTTGAGTGGACAAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGAAAACCCTCAAGCAATTCAAGACCATCGAAGACTTTGTTTATCATAAATTTTGATCCAGTTCACACCAGGACAAGGGATCTGGAGAGACACTTCGATCCCTATGGGAAAATATCAAACATAAGGATAAGGAGGAATTTTGCTTTTATACAATATGAAACCCAGGAGGATGCTACTAGAGCTTTGGAAGCAACAAACTTGAGCAAATTTATGGATCGTGTTATCACTGTGGAGTATGCTATTAGAGATGATGATGACAGGAGGAATGGATACAGTCCTGATAGAAGAGGCAATGACTCTCCTGATGGGAGATACGGCCGTGGCAGATCCCCAAGTCCATATCGCAGAGGTAGGGGTAGCCCGGATTATGGTCATGGAGCGAATCCAGCTTCCAGACCAGAACCAAGGGGAAGCCCAAAGTATGAACGAGGTGAAAGCCCAGTTAATGGCAGATATGACAGCCGGTCTCCTCCACCACGAGAAAGGTCTCCTCCTCCACGAGAAAGGTCACGATCCTGA 771 0.454 MRPVFCGNLDFDARQSDVERLFKRYGKVERVDMKSGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRKPSSNSRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYETQEDATRALEATNLSKFMDRVITVEYAIRDDDDRRNGYSPDRRGNDSPDGRYGRGRSPSPYRRGRGSPDYGHGANPASRPEPRGSPKYERGESPVNGRYDSRSPPPRERSPPPRERSRS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211963g00002 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 106 251 - -
Stsc211963g00002 256 MobiDBLite consensus disorder prediction 169 256 - -
Stsc211963g00002 256 MobiDBLite consensus disorder prediction 169 187 - -
Stsc211963g00002 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Stsc211963g00002 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Stsc211963g00002 256 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Stsc211963g00002 256 MobiDBLite consensus disorder prediction 72 97 - -
Stsc211963g00002 256 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Stsc211963g00002 256 SMART rrm1_1 96 162 IPR000504 GO:0003723
Stsc211963g00002 256 SMART rrm1_1 3 70 IPR000504 GO:0003723
Stsc211963g00002 256 Gene3D - 1 77 IPR012677 -
Stsc211963g00002 256 Gene3D - 78 246 IPR012677 -
Stsc211963g00002 256 MobiDBLite consensus disorder prediction 220 256 - -
Stsc211963g00002 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Stsc211963g00002 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Stsc211963g00002 256 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Stsc211963g00002 256 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211963g00002 Stsc-Chr211963 12422 15667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211963g00002 4 169 Eukaryotic Initiation Factors Gene Family AT1G49760 23.497 1.18e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211963g00002 K12893 - gmx:100797778 429.098