Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211963g00001 GCTGAAGCTACTAAACATGCTTCTACAACAACCACCAACAACACTACTACTACTACCATGTCCAAATCAAAGAAACCAACCATGAGAAGGTTCATTGGTGTGAGACAAAGGCCTTCAGGAAGATGGGTGGCTGAGATCAAAGACTCTTCACAACATGTGAGGTTATGGCTTGGGACCTACGACACACCGGAGGAAGCAGCAAGGGCCTACGACGAAGCGGCACGTGTCCTACGAGGCGAAAATGCAAGAACAAACTTTGCGTTATTTGGTTCTAATATAGGTGGAAGTTCTAAAGACTTATTATCTGAATCCGATGAAAAAATGGGACTGAGCTTCGCATCGTTAAAAGCGAAGCTCAGTAAGAATATTCAGAGCATTATGGCAAGAGCAAGCGATAACAAAAACAACAGCACCAAATTCTCGTCGTCAAAGAGTAGGGTGAGTGATCATTTCACCTTTGCTAGCATATTCAAAAGAAGAAATTGTTACCAACAATACCCTCCTCATCATCATGAAATGGCTAGTCCAATTGATATGAAGAACATTGATAAAGTTGTGCAACCTAGTATCATTGTTCCCCCTTTGGACAATGATCTTAGCCACAACAATAATCATCATAATAATGGTTCACCATCATCATGGGAAAATTCTAGTGTTTCTGATTGTAGTAGTTGTGATTGGTTTTTTGGATCATCAGATTTTGGAGATCTTAGTGTTGGTGATCAAGGGTACTTGGATCAATTATCGGGGTGGGTTGAAAGTTCAAACCTTTGTTCAAGTGGGGTTGGTGGTGATTTTGATGAAGATGAAAGTTCAAGGAGTAAGAGGTTTAAGGTGTCTTCAACAGTTCTTGTTCCTCCTACTTTCACACCTTCACCATATGATTGTAGTGGCAGTGGTTATGCTTCTCCTTATTATAATAATAATTAA 930 0.4022 AEATKHASTTTTNNTTTTTMSKSKKPTMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARVLRGENARTNFALFGSNIGGSSKDLLSESDEKMGLSFASLKAKLSKNIQSIMARASDNKNNSTKFSSSKSRVSDHFTFASIFKRRNCYQQYPPHHHEMASPIDMKNIDKVVQPSIIVPPLDNDLSHNNNHHNNGSPSSWENSSVSDCSSCDWFFGSSDFGDLSVGDQGYLDQLSGWVESSNLCSSGVGGDFDEDESSRSKRFKVSSTVLVPPTFTPSPYDCSGSGYASPYYNNN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211963g00001 309 MobiDBLite consensus disorder prediction 196 216 - -
Stsc211963g00001 309 MobiDBLite consensus disorder prediction 1 27 - -
Stsc211963g00001 309 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Stsc211963g00001 309 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Stsc211963g00001 309 MobiDBLite consensus disorder prediction 193 216 - -
Stsc211963g00001 309 SUPERFAMILY DNA-binding domain 31 87 IPR016177 GO:0003677
Stsc211963g00001 309 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Stsc211963g00001 309 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Stsc211963g00001 309 FunFam ethylene-responsive transcription factor RAP2-11 29 88 - -
Stsc211963g00001 309 MobiDBLite consensus disorder prediction 1 25 - -
Stsc211963g00001 309 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Stsc211963g00001 309 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Stsc211963g00001 309 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Stsc211963g00001 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211963g00001 Stsc-Chr211963 9947 10878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211963g00001 11 87 AP2-EREBP Transcription Factor Family AT5G19790 63.636 1.50e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211963g00001 AP2 4.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211963g00001 K09286 - gmx:100799444 306.605