Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00014 ATGGCTTCCTCTGCCTCCCAACAAAACAACCATTCTCCTTCAACTGTGATCCGTTTCTTCAAGATTGTTCTCCAAAAAAGCCTTCAAGATGGAACTCTTAAGGTACCAAAGAAGTTCAGTAACAAATATGGTGATGGTTTTCCGAATCCAGTGTATCTCAAGCCTCCGGATGGCACTGAATGGAAGATAGATTGGACTAAGCAAGATGGTGAAATTCTGCTTGAGAAGGGTTGGAATAAGCTTGCGAAATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTATAATGGAACTTCCGAAATTGAAGTACACATACTTGACCCGAGTTGCCTTGAAATAGACTATCCTTCCAATGATAACTCGGTTGGAATCTCAAAGAAACAGCACCTGCAAAAGAAAAAAGTAAAAGCAGCACCAAAGCCATCATCTCCTTCTAGAAGTAAAAGATTGAAACGTACCGCCAAAACTACGGATGAGGAAGGAAGCCCTGGTACACAGAACTGGAAGCAAAATGCCAATTGTAAAGAAGATAGTCAATCTGAAGACACACAGCTTAAGATGCCAACAAGACGACGTAAAAGGGAATATTTGGTTGTTTTCTCTCCTGGGACCAAGGGGTTTCAAGCTCTGATTGAAGCTAAGAAGTTCAAGTCAGAAAATCCCTCTTTCATGCTCAAGATAACTAAAGCTAATACATCAACATCACCAGCTACCATACCAAATGCCTTCTTCACCAAGTATTTTAAAAAGAAGGAGCCAAATGTAAAGATACAGTTCGAAAACAAGTTGTGGCCTGCAAAGTTGCTCTCTTATCCATCATTGTATAAGGCCTGTATCTCCAGTGGTTGGCAGCATTTTATTCTTGGCAGTAATTTAAAAGCAGGAGATGTTTGTGTCTTTGAGCTCATCAAAGTAGAAGAACGAGTGCTTGATGTTCATATTTATAGAGCTGATGGTTAG 966 0.4017 MASSASQQNNHSPSTVIRFFKIVLQKSLQDGTLKVPKKFSNKYGDGFPNPVYLKPPDGTEWKIDWTKQDGEILLEKGWNKLAKYYSLDNGHLLWFEYNGTSEIEVHILDPSCLEIDYPSNDNSVGISKKQHLQKKKVKAAPKPSSPSRSKRLKRTAKTTDEEGSPGTQNWKQNANCKEDSQSEDTQLKMPTRRRKREYLVVFSPGTKGFQALIEAKKFKSENPSFMLKITKANTSTSPATIPNAFFTKYFKKKEPNVKIQFENKLWPAKLLSYPSLYKACISSGWQHFILGSNLKAGDVCVFELIKVEERVLDVHIYRADG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00014 321 Gene3D - 206 320 IPR015300 -
Stsc211960g00014 321 PANTHER B3 DOMAIN-CONTAINING 10 307 - -
Stsc211960g00014 321 Gene3D - 13 112 IPR015300 -
Stsc211960g00014 321 SUPERFAMILY DNA-binding pseudobarrel domain 218 320 IPR015300 -
Stsc211960g00014 321 SUPERFAMILY DNA-binding pseudobarrel domain 13 112 IPR015300 -
Stsc211960g00014 321 Pfam B3 DNA binding domain 229 319 IPR003340 GO:0003677
Stsc211960g00014 321 Pfam B3 DNA binding domain 19 108 IPR003340 GO:0003677
Stsc211960g00014 321 ProSiteProfiles B3 DNA-binding domain profile. 224 320 IPR003340 GO:0003677
Stsc211960g00014 321 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc211960g00014 321 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc211960g00014 321 SMART B3_2 225 320 IPR003340 GO:0003677
Stsc211960g00014 321 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc211960g00014 321 CDD B3_DNA 223 318 IPR003340 GO:0003677
Stsc211960g00014 321 MobiDBLite consensus disorder prediction 124 190 - -
Stsc211960g00014 321 MobiDBLite consensus disorder prediction 161 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00014 Stsc-Chr211960 30215 32437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00014 19 320 B3 DNA Binding Superfamily AT3G18990 27.035 2.75e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00014 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00014 - - adu:107471605 328.561