Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00013 ATGGCTTCCTCTACTTCCCAACAAAACAAGTACCATTCTCCATCAACTGTTATCCGTTTCTTAAAGATTGTTCTCAAGAAAAGCCTTCAAGATGGAACTCTTAAGGTACCAAAGAAGTTCAGTAAGAAATATGGTGATGGTTTGCCGAATCCAGTGTATATCAAGCCTCCGGATGGCACTGAATGGGAATTAGATTGGACTAAGCAAGATGGTGAAGTTCTGTTTGAGAAGGGTTGGAAAGAGTTTGCAAAATATTACTCTCTAGATGCTGGCCATTTGTTGTGGTTTGAGTACAATGGAACTTCCGAAATCGAAGTACACATACTTGACCCAAGTTGCCTTGAAATAGACTATCCTTCCAATGACAACTCGGTTGTGATCTCGAAGAAACAGCAACTGCAAAAGATAAAAGAGAAAGCAGCACCAAAGCCATCATCTCCTTCTAGAAGTAAAAGATTGAAACGTACCGCCGAAACTACGGATGAGGAAGGAAGACCTGATACACAAAACTGGAAGCAAAATGCTAGTAGTGAAGAAGAGACACAGCTTAAGATGCCAACAAGACGACGTAAAAGGCCATATCTGAATGGTAGTTATTTCACTCCCTACCATGGAACATGTATAACACCAGAGGCTCCTTCTCTGGCAAATTATAATCAGTTATGGCTGAAATGTAGTTAA 681 0.4053 MASSTSQQNKYHSPSTVIRFLKIVLKKSLQDGTLKVPKKFSKKYGDGLPNPVYIKPPDGTEWELDWTKQDGEVLFEKGWKEFAKYYSLDAGHLLWFEYNGTSEIEVHILDPSCLEIDYPSNDNSVVISKKQQLQKIKEKAAPKPSSPSRSKRLKRTAETTDEEGRPDTQNWKQNASSEEETQLKMPTRRRKRPYLNGSYFTPYHGTCITPEAPSLANYNQLWLKCS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00013 226 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Stsc211960g00013 226 MobiDBLite consensus disorder prediction 135 195 - -
Stsc211960g00013 226 MobiDBLite consensus disorder prediction 135 168 - -
Stsc211960g00013 226 Pfam B3 DNA binding domain 23 110 IPR003340 GO:0003677
Stsc211960g00013 226 PANTHER B3 DOMAIN-CONTAINING 16 174 - -
Stsc211960g00013 226 SMART B3_2 20 112 IPR003340 GO:0003677
Stsc211960g00013 226 Gene3D - 14 113 IPR015300 -
Stsc211960g00013 226 SUPERFAMILY DNA-binding pseudobarrel domain 13 113 IPR015300 -
Stsc211960g00013 226 CDD B3_DNA 19 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00013 Stsc-Chr211960 27845 28922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00013 2 122 B3 DNA Binding Superfamily AT1G49475 37.190 9.60e-20 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00013 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00013 - - adu:107471605 221.861