Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00012 ATGATTCAAATAACACATCCAAGTATATTGAAAAAAGCTGCTGCCATACCAATTCCCTTCTTCACAAAGTATTTTGCAAAGAAGAAGAAGGTGAATATAAACATAAGGATGGGAAGCAAGTTGATGCCAGTGAGGTTGCTCTATTATCCATCATTTCGTGCTGCTTATATCTCCGCCGGTTGGCAAGCTTTTGCTGTTGCAAGTAATTTAAAAGCTGGAGATGTTTGTATCTTTGAGCTTGAAAATGAACAAGATCAAGTGCTCGATGTTCATATTTATCGAGCGGGCCATTTGTCAATCCTTTAG 306 0.3824 MIQITHPSILKKAAAIPIPFFTKYFAKKKKVNINIRMGSKLMPVRLLYYPSFRAAYISAGWQAFAVASNLKAGDVCIFELENEQDQVLDVHIYRAGHLSIL 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00012 101 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 96 IPR044837 -
Stsc211960g00012 101 Gene3D - 1 97 IPR015300 -
Stsc211960g00012 101 Pfam B3 DNA binding domain 5 95 IPR003340 GO:0003677
Stsc211960g00012 101 SMART B3_2 1 96 IPR003340 GO:0003677
Stsc211960g00012 101 CDD B3_DNA 16 94 IPR003340 GO:0003677
Stsc211960g00012 101 SUPERFAMILY DNA-binding pseudobarrel domain 5 95 IPR015300 -
Stsc211960g00012 101 ProSiteProfiles B3 DNA-binding domain profile. 1 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00012 Stsc-Chr211960 27301 27695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00012 4 97 REM Transcription Factor Family AT1G49480 34.375 1.73e-10 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00012 B3 3.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00012 - - ahf:112785297 93.2041