Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00011 ATGGCTCCTTCCTCTAGCTTTCAACCAAAGAACCAGTCTCCTTCCACTGTGATCCGTTTCTTTAAGATTGTTCTCAGTAAAAGTCTCCAAGCTGGAACTCTTAAGATACCAACGAAGTTCAGTAGGAAACATGGTAGTGATGTGCCGAATCCAGTGTATCTGAAGCCTCCAGACGGCACTCAATGGAAAATAGATTGGACTAAGCATGATGATGGTGAGATTTTGTTTGAAAATGGTTGGAAAGAATTTGCTGCATATTACTCTCTGCATGATGGAAACTTGTTGTGGTTTGAGTTTAAAGAAACTTCTCTTTTTGAGGTACACATATTTGACACGAGCGGCCTTGAAATAGACTATCCTCTCAATGATCAGACTGATGATGATTTTGTTGAGATTTTGAATAAGCCTCCACCACGACAGAGGAAACGGTCGAAAGCACCATTATTGTCTCCTTGTACAAAAAGACAATTGAGAAGTGCCTCAAAAACTAGAGATGTTAAAAGAAGTAGTCAATCTGAGGAGACTAACCTTGAAATACCAGTATTTTCATCTCGCAAACAAGATTTCTTTGATTTTTATCCTGGATCCAGGGGGTTTAAGGCTCTGAAAGAAGCTCAGAAGTTCAGCTCAGAAAATCCCTTTTTCATTGTCAAGATAAGGCAACCTAAACGTACAACTGCTACTTTGCCAGCTTCCTTCTTCACAAAATATTTTAAAAATGAGCAGCGGAAAGTAAAGATAAGGTTTGAGGGGAAGTTGTTTCCAGCGAAGTTGTACTACTATCGAGATGGTTCTATGCCCCTTATCTCTACCGGTTGGCCCCGTTTTGCTCAAGCAAGTAACTTACAACCTGGGGATGTAATTGTGTTTGAGCTTGTCGATAGAGATGATCCGGTGTTTGAAACTCATATTTATAGAGCTCAAGCTTTCAAGTCTCGGTCCGGGGGGTTTCAATCTCTAAAAGCAGCTCAGAATTTCAAGTCAGAAAATCCCTCTTTCATGATCAAAATAACACATTATAGTATATTGACAAAAGCTGCTACCATACCAGTTCCCTTCTTCACAAAGTATTTTGGGAAGAAGAAGAAGGTGAATATAAACATAAGGATGGGAAGCAAGTTGCTGCCGGCGAAGTTGGTCTATTATCCATCATTTCGTTCTGCTTGTATCTCTGCTGGTTGGCGTGCTTTTTTTGTCGCCAGTAATTTAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATAAATGAACAAGATCAAGTGCTCGATGTTCATATTTATCGAGGCGGTCGTTTGTCAATCCTTTAG 1305 0.4008 MAPSSSFQPKNQSPSTVIRFFKIVLSKSLQAGTLKIPTKFSRKHGSDVPNPVYLKPPDGTQWKIDWTKHDDGEILFENGWKEFAAYYSLHDGNLLWFEFKETSLFEVHIFDTSGLEIDYPLNDQTDDDFVEILNKPPPRQRKRSKAPLLSPCTKRQLRSASKTRDVKRSSQSEETNLEIPVFSSRKQDFFDFYPGSRGFKALKEAQKFSSENPFFIVKIRQPKRTTATLPASFFTKYFKNEQRKVKIRFEGKLFPAKLYYYRDGSMPLISTGWPRFAQASNLQPGDVIVFELVDRDDPVFETHIYRAQAFKSRSGGFQSLKAAQNFKSENPSFMIKITHYSILTKAATIPVPFFTKYFGKKKKVNINIRMGSKLLPAKLVYYPSFRSACISAGWRAFFVASNLKAGDVCIFELINEQDQVLDVHIYRGGRLSIL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00011 434 Gene3D - 317 428 IPR015300 -
Stsc211960g00011 434 Gene3D - 197 310 IPR015300 -
Stsc211960g00011 434 Gene3D - 14 114 IPR015300 -
Stsc211960g00011 434 MobiDBLite consensus disorder prediction 158 172 - -
Stsc211960g00011 434 SUPERFAMILY DNA-binding pseudobarrel domain 15 113 IPR015300 -
Stsc211960g00011 434 SUPERFAMILY DNA-binding pseudobarrel domain 326 427 IPR015300 -
Stsc211960g00011 434 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 321 429 IPR044837 -
Stsc211960g00011 434 SUPERFAMILY DNA-binding pseudobarrel domain 208 307 IPR015300 -
Stsc211960g00011 434 CDD B3_DNA 19 111 IPR003340 GO:0003677
Stsc211960g00011 434 MobiDBLite consensus disorder prediction 153 172 - -
Stsc211960g00011 434 ProSiteProfiles B3 DNA-binding domain profile. 19 113 IPR003340 GO:0003677
Stsc211960g00011 434 CDD B3_DNA 331 427 IPR003340 GO:0003677
Stsc211960g00011 434 ProSiteProfiles B3 DNA-binding domain profile. 332 429 IPR003340 GO:0003677
Stsc211960g00011 434 ProSiteProfiles B3 DNA-binding domain profile. 212 308 IPR003340 GO:0003677
Stsc211960g00011 434 SMART B3_2 333 429 IPR003340 GO:0003677
Stsc211960g00011 434 SMART B3_2 20 113 IPR003340 GO:0003677
Stsc211960g00011 434 SMART B3_2 215 308 IPR003340 GO:0003677
Stsc211960g00011 434 CDD B3_DNA 228 306 IPR003340 GO:0003677
Stsc211960g00011 434 Pfam B3 DNA binding domain 20 112 IPR003340 GO:0003677
Stsc211960g00011 434 Pfam B3 DNA binding domain 336 427 IPR003340 GO:0003677
Stsc211960g00011 434 Pfam B3 DNA binding domain 226 307 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00011 Stsc-Chr211960 20659 23411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00011 296 427 B3 DNA Binding Superfamily AT3G18990 28.986 3.98e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00011 B3 3.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00011 - - adu:107471605 409.068