Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00010 ATGGCTTCATGTAGCTACCAACCAAACAAGCATTCTCCTCTTCCAACTTTGATCCGTTTCTTTAAGATTATTCTCAGACAAAACCTTCAACATGGAAATCTTAAGATACCAAACAAGTTCACTAGCAAATATGGTGGTGATGTGAAAAATCCAGTGTATCTGAAGCCTCCAGATGGAACTCAATGGAAAGTACATTGGACTCAGCATGATGGTGACATTTTATTTGAAAAGGGTTGGAAAGAGTTTGCTGTGTATTACTCCCTGCATCATGGCCACTTGTTGAGGTTTGAGTACAATGGAACTTCTTGTTTTGAGGTACACATATTTGACATGAGTGGCCTTGAAATACACTATCCTTTCAATAACCGGATCGATGATGATTCGGTTGAGACTTTGAAAGATCCACCACCACAATTTCAGGGCCTACAGAGGAAAAGATTGAAAAAACCATTATCATTATCATTGCCTTCTACAAGTAAGCAATTGAGAATTGCCACAGAAACTAGAGATGTTGAGATGCCAATAATTCCATCTGTTGGTCATCGTTTGGATGCTTTTGTGCCTGGGACCTGTGGTTTTCGATGCCTGGAAGAAGCTCGGAAGTTCAACTCAGAATATCCATCTTTCATAATCAAGCTGGTGAAAAATACTCTAGAGAGATCAAGGGCTAATTTTAAAGCTTCCTTCTACAGAAAGTATTTTGACAACAAGGAGCAGGCTATAGAGATACGGTATCGAGGCAAGTTGTGGCCTGCAAAGTTGCTCTATTATCCTGTGGTGCCGGCCGCCTATATCTCTACCGGTTGGCGGCCTTTTAGAATTGACAATGATTTAAAATTTGGAGATGTTTGTGTCTTTGAGCTCATTAATGGAGAAAACCCAGTGCTTAATGCTCATATTTATAGAGCCAATGATTATGCAATCCATTAG 930 0.3989 MASCSYQPNKHSPLPTLIRFFKIILRQNLQHGNLKIPNKFTSKYGGDVKNPVYLKPPDGTQWKVHWTQHDGDILFEKGWKEFAVYYSLHHGHLLRFEYNGTSCFEVHIFDMSGLEIHYPFNNRIDDDSVETLKDPPPQFQGLQRKRLKKPLSLSLPSTSKQLRIATETRDVEMPIIPSVGHRLDAFVPGTCGFRCLEEARKFNSEYPSFIIKLVKNTLERSRANFKASFYRKYFDNKEQAIEIRYRGKLWPAKLLYYPVVPAAYISTGWRPFRIDNDLKFGDVCVFELINGENPVLNAHIYRANDYAIH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00010 309 ProSiteProfiles B3 DNA-binding domain profile. 208 304 IPR003340 GO:0003677
Stsc211960g00010 309 SUPERFAMILY DNA-binding pseudobarrel domain 202 304 IPR015300 -
Stsc211960g00010 309 SMART B3_2 20 112 IPR003340 GO:0003677
Stsc211960g00010 309 SMART B3_2 209 304 IPR003340 GO:0003677
Stsc211960g00010 309 Pfam B3 DNA binding domain 219 303 IPR003340 GO:0003677
Stsc211960g00010 309 Pfam B3 DNA binding domain 22 110 IPR003340 GO:0003677
Stsc211960g00010 309 SUPERFAMILY DNA-binding pseudobarrel domain 17 112 IPR015300 -
Stsc211960g00010 309 PANTHER B3 DOMAIN-CONTAINING 18 290 - -
Stsc211960g00010 309 CDD B3_DNA 207 302 IPR003340 GO:0003677
Stsc211960g00010 309 Gene3D - 193 307 IPR015300 -
Stsc211960g00010 309 Gene3D - 17 113 IPR015300 -
Stsc211960g00010 309 CDD B3_DNA 19 110 IPR003340 GO:0003677
Stsc211960g00010 309 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00010 Stsc-Chr211960 18504 20211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00010 2 143 B3 DNA Binding Superfamily AT1G49475 35.915 2.46e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00010 B3 3.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00010 - - ahf:112717097 507.294