Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00006 ATGGTTACTAACATCATCAGGTTCATAACATTGCAGAAGTTACCAAACAAGTTCACTAACAAATATGGCTCTGGCCTACCAAATCCATTGTATCTTAAGCCTCCAGATGGCACTGAATGGAAAGTAGATTGGACTAATCATGATGGTGGAATTCTGTTTGAAAAGGGTTGGAAAGAGTTTGCTGCATATTACTCTCTTGATAATGGCCATTTGCTGTGCTTTGAGTACAAGGGAACTTCTCACATTCAAGTACACATACTTGACATGAGTGGCCTCGAAATAGACTATCCTACGATTGCGGTTCCTGCCCACGATCAGATCAAAGAGCAGCTGCCACGACGCAGGGGCCGGCCACGGAAAAGTCTCAAAGAACCAATTCCATCATCTCCTTCTACAAGTAAACAATTGAGAAGTGGCATAACAACTATAGATGTGGATAGCAGTCCCAAGAGGAAAAGATTGAATGAACCACTGCCAGGAGTCCGGAGCCGACCGAGGAAGAAACAGAAAGCACCAATGTCATCTCCTTTTAAAGTGGTAGAAGGTTCTAAATCTTCTGTTAGGCCCTGCCTTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTGAGTGGGAAAATCCTTCTTTCTTCATCAAGATAACACAATGGACTCAGTCGAGAGGACCGACTTACTTTTCAACTAAATTCTTCCGAAAGTATTTTGAAAATAATCCACAGGATGTGGAGATAAGGTTTCGAAAGGAGGTGTTCCCTGCAAAGTTTGTCTATAGGCCATCATCATGTAATGCTTATATCTCCGCTGGTTGGACCGGTTTTGCTAAAGCTAGTAAATTACAAGTCGGAGATGTTTGTCTGTTTAAGCTCATCAATAGAAAAGATCCAGTGCTTGATGTTCAAATTTGTCGCCGACTAGGCCGAGGTAAGGAAATTGTTTAG 939 0.4217 MVTNIIRFITLQKLPNKFTNKYGSGLPNPLYLKPPDGTEWKVDWTNHDGGILFEKGWKEFAAYYSLDNGHLLCFEYKGTSHIQVHILDMSGLEIDYPTIAVPAHDQIKEQLPRRRGRPRKSLKEPIPSSPSTSKQLRSGITTIDVDSSPKRKRLNEPLPGVRSRPRKKQKAPMSSPFKVVEGSKSSVRPCLARPESLKEAKKFEWENPSFFIKITQWTQSRGPTYFSTKFFRKYFENNPQDVEIRFRKEVFPAKFVYRPSSCNAYISAGWTGFAKASKLQVGDVCLFKLINRKDPVLDVQICRRLGRGKEIV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00006 312 CDD B3_DNA 208 303 IPR003340 GO:0003677
Stsc211960g00006 312 Gene3D - 192 305 IPR015300 -
Stsc211960g00006 312 PANTHER B3 DOMAIN-CONTAINING 13 299 - -
Stsc211960g00006 312 MobiDBLite consensus disorder prediction 105 178 - -
Stsc211960g00006 312 ProSiteProfiles B3 DNA-binding domain profile. 1 90 IPR003340 GO:0003677
Stsc211960g00006 312 Gene3D - 7 91 IPR015300 -
Stsc211960g00006 312 MobiDBLite consensus disorder prediction 146 163 - -
Stsc211960g00006 312 Pfam B3 DNA binding domain 215 304 IPR003340 GO:0003677
Stsc211960g00006 312 Pfam B3 DNA binding domain 13 87 IPR003340 GO:0003677
Stsc211960g00006 312 SUPERFAMILY DNA-binding pseudobarrel domain 13 97 IPR015300 -
Stsc211960g00006 312 CDD B3_DNA 14 88 IPR003340 GO:0003677
Stsc211960g00006 312 ProSiteProfiles B3 DNA-binding domain profile. 265 305 IPR003340 GO:0003677
Stsc211960g00006 312 MobiDBLite consensus disorder prediction 125 145 - -
Stsc211960g00006 312 SMART B3_2 8 90 IPR003340 GO:0003677
Stsc211960g00006 312 SMART B3_2 210 305 IPR003340 GO:0003677
Stsc211960g00006 312 SUPERFAMILY DNA-binding pseudobarrel domain 206 297 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00006 Stsc-Chr211960 9446 10717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00006 13 303 B3 DNA Binding Superfamily AT3G18990 29.063 6.69e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00006 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00006 - - adu:107471893 329.331