Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00005 ATGGTTACTAACATCATCAGGTTCATAACATTGCAGAAGTTACCAAACAAGTTCACTAACAAATATGGCTCTGGCCTACCAAATCCATTGTATCTTAAGCCTCCAGATGGCACTGAATGGAAAGTAGATTGGACTAATCATGATGGTGGAATTCTGTTTGAAAAGGGTTGGAAAGAGTTTGCTGCATATTACTCTCTTGATAATGGCCATTTGCTGTGCTTTGAGTACAAGGGAACTTCTCACATTCAAGTACACATACTTGACATGAGTGGCCTCGAAATAGACTATCCTACGATTGCGGTTCCTGCCCACGATCAGATCAAAGAGCAGCTGCCACGACGCAGGGGCCGGCCACGGAAAAGTCTCAAAGAACCAATTCCATCATCTCCTTCTACAAGTAAACAATTGAGAAGTGGCATAACAACTATAGATGTGGATAGCAGTCCCAAGAGGAAAAGATTGAATGAACCACTGCCAGGAGTCCGGAGCCGACCGAGGAAGAAACAGAAAGCACCAATGTCATCTCCTTTTAAAGTGGTAGAAGGTTCTAAATCTTCTGTTAGGCCCTGCCTTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTGAGTGGGAAAATCCTTCTTTCTTCATCAAGATAACACAATGGACTCAGTCGAGAGGACCGACTTACTTTTCAACTAAATTCTTCCGAAAGTATTTTGAAAATAATCCACAGGATGTGGAGATAAGGTTTCGAAAGGAGGTGTTCCCTGCAAAGTTTGTCTATAGGCCATCATCATGTAATGCTTATATCTCCGCTGGTTGGACCGGTTTTGCTAAAGCTAGTAAATTACAAGTCGGAGATGTTTGTCTGTTTAAGCTCATCAATAGAAAAGATCCAGTGCTTGATGTTCAAATTTGTCGCCGACTAGGCCGAGAATCACATTCCAAACCTGTGACTCATGGGATTCATCTCTTGGAAAAAGCTAAGGAACTCAACTCAGAAAATCCTTCTTTAATGGTCAAGATAAAGAACAGTGATCCAAGTAAATCAAGGCCTAACTTATCAGGTGTCTTCTACAGAAGGTATTTTAAAAAGAATCAGCAGAATGTAAAGTTAAGGTTTGGAAAGGAGTTGTTGCCTGCTAAGTTCATCTACAACCCAATATCAAGAAGTGCCGTTTTTTCTGCCGGTTGGCATGCTTTTGCTCAAGCGTGTGAATTGGATCCTGGAGATGTTTGTTTCTTTGAGCTCATTAATGGAAAAGATATGTTTGATGTTCATATCTGTAGAGCCCATTACTAG 1290 0.4116 MVTNIIRFITLQKLPNKFTNKYGSGLPNPLYLKPPDGTEWKVDWTNHDGGILFEKGWKEFAAYYSLDNGHLLCFEYKGTSHIQVHILDMSGLEIDYPTIAVPAHDQIKEQLPRRRGRPRKSLKEPIPSSPSTSKQLRSGITTIDVDSSPKRKRLNEPLPGVRSRPRKKQKAPMSSPFKVVEGSKSSVRPCLARPESLKEAKKFEWENPSFFIKITQWTQSRGPTYFSTKFFRKYFENNPQDVEIRFRKEVFPAKFVYRPSSCNAYISAGWTGFAKASKLQVGDVCLFKLINRKDPVLDVQICRRLGRESHSKPVTHGIHLLEKAKELNSENPSLMVKIKNSDPSKSRPNLSGVFYRRYFKKNQQNVKLRFGKELLPAKFIYNPISRSAVFSAGWHAFAQACELDPGDVCFFELINGKDMFDVHICRAHY 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00005 429 CDD B3_DNA 208 303 IPR003340 GO:0003677
Stsc211960g00005 429 SUPERFAMILY DNA-binding pseudobarrel domain 206 299 IPR015300 -
Stsc211960g00005 429 MobiDBLite consensus disorder prediction 105 178 - -
Stsc211960g00005 429 Pfam B3 DNA binding domain 215 304 IPR003340 GO:0003677
Stsc211960g00005 429 Pfam B3 DNA binding domain 348 427 IPR003340 GO:0003677
Stsc211960g00005 429 Pfam B3 DNA binding domain 13 87 IPR003340 GO:0003677
Stsc211960g00005 429 Gene3D - 7 91 IPR015300 -
Stsc211960g00005 429 CDD B3_DNA 332 426 IPR003340 GO:0003677
Stsc211960g00005 429 ProSiteProfiles B3 DNA-binding domain profile. 1 90 IPR003340 GO:0003677
Stsc211960g00005 429 MobiDBLite consensus disorder prediction 146 163 - -
Stsc211960g00005 429 SUPERFAMILY DNA-binding pseudobarrel domain 12 90 IPR015300 -
Stsc211960g00005 429 SMART B3_2 8 90 IPR003340 GO:0003677
Stsc211960g00005 429 SMART B3_2 335 428 IPR003340 GO:0003677
Stsc211960g00005 429 SMART B3_2 210 305 IPR003340 GO:0003677
Stsc211960g00005 429 SUPERFAMILY DNA-binding pseudobarrel domain 327 427 IPR015300 -
Stsc211960g00005 429 PANTHER B3 DOMAIN-CONTAINING 331 422 - -
Stsc211960g00005 429 CDD B3_DNA 14 88 IPR003340 GO:0003677
Stsc211960g00005 429 ProSiteProfiles B3 DNA-binding domain profile. 265 305 IPR003340 GO:0003677
Stsc211960g00005 429 Gene3D - 318 429 IPR015300 -
Stsc211960g00005 429 Gene3D - 192 305 IPR015300 -
Stsc211960g00005 429 MobiDBLite consensus disorder prediction 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00005 Stsc-Chr211960 8045 10717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00005 13 303 B3 DNA Binding Superfamily AT3G18990 29.063 5.48e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00005 B3 3.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00005 - - adu:107471893 499.59