Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00004 ATGGTTATGGCTTCCTCTTGCTTCCAACAAAACAACAAGCATTCTCCTTCCAACCTCGTCATCCGTTTCTTCAAGATTATTCTCAGAAAAACTCTTCAAGATGGAAACCTTAAGTTACCAAACAAGTTCACTAACAAATATGGCTCTGGCCTACCAAATCCATTGTATCTTAAGCCTCCAGATGGCACTGAATGGAAAGTAGATTGGACTAATCATGATGGTGGAATTCTGTTTGAAAAGGGTTGGAAAGAGTTTGCTGCATATTACTCTCTTGATAATGGCCATTTGCTGTGCTTTGAGTACAAGGGAACTTCTCACATTCAAGTACACATACTTGACATGAGTGGCCTCGAAATAGACTATCCTACGATTGCGGTTCCTGCCCACGATCAGATCAAAGAGCAGCTGCCACGACGCAGGGGCCGGCCACGGAAAAGTCTCAAAGAACCAATTCCATCATCTCCTTCTACAAGTAAACAATTGAGAAGTGGCATAACAACTATAGATGTGGATAGCAGTCCCAAGAGGAAAAGATTGAATGAACCACTGCCAGGAGTCCGGAGCCGACCGAGGAAGAAACAGAAAGCACCAATGTCATCTCCTTTTAAAGTGGTAGAAGGTTCTAAATCTTCTGTTAGGCCCTGCCTTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTGAGTGGGAAAATCCTTCTTTCTTCATCAAGATAACACAATGGACTCAGTCGAGAGGACCGACTTACTTTTCAACTAAATTCTTCCGAAAGTATTTTGAAAATAATCCACAGGATGTGGAGATAAGGTTTCGAAAGGAGGTGTTCCCTGCAAAGTTTGTCTATAGGCCATCATCATGTAATGCTTATATCTCCGCTGGTTGGACCGGTTTTGCTAAAGCTAGTAAATTACAAGTCGGAGATGTTTGTCTGTTTAAGCTCATCAATAGAAAAGATCCAGTGCTTGATGTTCAAATTTGTCGCCGACTAGGCCGAGAATCACATTCCAAACCTGTGACTCATGGGATTCATCTCTTGGAAAAAGCTAAGGAACTCAACTCAGAAAATCCTTCTTTAATGGTCAAGATAAAGAACAGTGATCCAAGTAAATCAAGGCCTAACTTATCAGGTGTCTTCTACAGAAGGTATTTTAAAAAGAATCAGCAGAATGTAAAGTTAAGGTTTGGAAAGGAGTTGTTGCCTGCTAAGTTCATCTACAACCCAATATCAAGAAGTGCCGTTTTTTCTGCCGGTTGGCATGCTTTTGCTCAAGCGTGTGAATTGGATCCTGGAGATGTTTGTTTCTTTGAGCTCATTAATGGAAAAGATATGTTTGATGTTCATATCTGTAGAGCCCATTACTAG 1365 0.4117 MVMASSCFQQNNKHSPSNLVIRFFKIILRKTLQDGNLKLPNKFTNKYGSGLPNPLYLKPPDGTEWKVDWTNHDGGILFEKGWKEFAAYYSLDNGHLLCFEYKGTSHIQVHILDMSGLEIDYPTIAVPAHDQIKEQLPRRRGRPRKSLKEPIPSSPSTSKQLRSGITTIDVDSSPKRKRLNEPLPGVRSRPRKKQKAPMSSPFKVVEGSKSSVRPCLARPESLKEAKKFEWENPSFFIKITQWTQSRGPTYFSTKFFRKYFENNPQDVEIRFRKEVFPAKFVYRPSSCNAYISAGWTGFAKASKLQVGDVCLFKLINRKDPVLDVQICRRLGRESHSKPVTHGIHLLEKAKELNSENPSLMVKIKNSDPSKSRPNLSGVFYRRYFKKNQQNVKLRFGKELLPAKFIYNPISRSAVFSAGWHAFAQACELDPGDVCFFELINGKDMFDVHICRAHY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00004 454 MobiDBLite consensus disorder prediction 171 188 - -
Stsc211960g00004 454 SMART B3_2 23 115 IPR003340 GO:0003677
Stsc211960g00004 454 SMART B3_2 235 330 IPR003340 GO:0003677
Stsc211960g00004 454 SMART B3_2 360 453 IPR003340 GO:0003677
Stsc211960g00004 454 MobiDBLite consensus disorder prediction 130 203 - -
Stsc211960g00004 454 SUPERFAMILY DNA-binding pseudobarrel domain 352 452 IPR015300 -
Stsc211960g00004 454 ProSiteProfiles B3 DNA-binding domain profile. 290 330 IPR003340 GO:0003677
Stsc211960g00004 454 Gene3D - 217 330 IPR015300 -
Stsc211960g00004 454 Gene3D - 343 454 IPR015300 -
Stsc211960g00004 454 CDD B3_DNA 233 328 IPR003340 GO:0003677
Stsc211960g00004 454 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Stsc211960g00004 454 SUPERFAMILY DNA-binding pseudobarrel domain 231 324 IPR015300 -
Stsc211960g00004 454 Pfam B3 DNA binding domain 240 329 IPR003340 GO:0003677
Stsc211960g00004 454 Pfam B3 DNA binding domain 30 112 IPR003340 GO:0003677
Stsc211960g00004 454 Pfam B3 DNA binding domain 373 452 IPR003340 GO:0003677
Stsc211960g00004 454 CDD B3_DNA 357 451 IPR003340 GO:0003677
Stsc211960g00004 454 MobiDBLite consensus disorder prediction 150 170 - -
Stsc211960g00004 454 CDD B3_DNA 22 113 IPR003340 GO:0003677
Stsc211960g00004 454 Gene3D - 19 116 IPR015300 -
Stsc211960g00004 454 SUPERFAMILY DNA-binding pseudobarrel domain 22 115 IPR015300 -
Stsc211960g00004 454 PANTHER B3 DOMAIN-CONTAINING 356 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00004 Stsc-Chr211960 8045 11314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00004 23 328 B3 DNA Binding Superfamily AT3G18990 29.552 4.03e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00004 B3 3.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00004 - - adu:107471893 530.791