Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00003 ATGGCTTCTCCTTCCACCGTGATCTGTTTCTTCAAGATTGTTCTCAGAAAAACCCTTCAACATGGAATACTAAAGATACCAAAGAAGTTTTGTATAAAATATGGTGATGGTGTGCCAAATCCAGTGTGTCTGAAGACTCCAGATGGCATTCAATGGAAAGTAGATTGGAGTAAGTGTGATGGTAAGATGCTATTTAAGAACGGTTGGAAAGAGTTTGCTGCATATTACTCTTTGGATAATGGCCATATGCTGTGGTTCGAGTACAATGGAACTTCTAAAATTGAAGTACACATACTTGACACGACTGGCCTTGAGATAGACTATCCTTCAACGAACCACAACAGTGATGACAGTTCGGTTGAGATCTCGAATGAACTGCCGAAAACAGTGGATGATGACAACTCGATTGAGGCCGTGAATGAACCGCCACAAAGAGTCCCAGGCCGGCCGAGCAAAAAAGCAAAAGCAGCAGCTGAAAATCCATCATCATCATCACCTAAAAGAGGTGTAGAAAGGGGCTGTAATAAACAAAGGTATCAATCTGAAGAGACAGGTCTTAAGATGCCAACAATTCAAAGTGCCAGAGTTGATATGGATATTATTCAAGCAGCAAAGAAGTTTAAGTCAAAGAATCCCTCTTTCATAATCAAGATAAGGCAAACTGAGCTAACTAGAGCTGCAACAAGCATTCCAGCCGCCTTCTTCAGAGAACACTTTAAGGAAGAAAAGGAGCATCTAAATCTATGCAATGGAAAGAAGCAGTGGCCTGCAACATTGATCTATTATCCAGTTAAGAAAAGCGTCGTCTTGTCCTCTGGTTGGCGCTTGTTCGCTCAAGAAAATAAGTTGAAAGCTGGAGATATTTGTATCTTTGTGCTTGTTTACAGAGAAGGCGCGGAACTTCATGCTTATATTTTTCGAAGAACAATAGAAGGGAAAACTGCAGAAGTTGCAGAGAAGACAAGAACAAGAAATTGA 978 0.408 MASPSTVICFFKIVLRKTLQHGILKIPKKFCIKYGDGVPNPVCLKTPDGIQWKVDWSKCDGKMLFKNGWKEFAAYYSLDNGHMLWFEYNGTSKIEVHILDTTGLEIDYPSTNHNSDDSSVEISNELPKTVDDDNSIEAVNEPPQRVPGRPSKKAKAAAENPSSSSPKRGVERGCNKQRYQSEETGLKMPTIQSARVDMDIIQAAKKFKSKNPSFIIKIRQTELTRAATSIPAAFFREHFKEEKEHLNLCNGKKQWPATLIYYPVKKSVVLSSGWRLFAQENKLKAGDICIFVLVYREGAELHAYIFRRTIEGKTAEVAEKTRTRN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00003 325 CDD B3_DNA 212 307 IPR003340 GO:0003677
Stsc211960g00003 325 PANTHER B3 DOMAIN-CONTAINING 8 296 - -
Stsc211960g00003 325 Gene3D - 195 309 IPR015300 -
Stsc211960g00003 325 ProSiteProfiles B3 DNA-binding domain profile. 213 309 IPR003340 GO:0003677
Stsc211960g00003 325 SUPERFAMILY DNA-binding pseudobarrel domain 207 308 IPR015300 -
Stsc211960g00003 325 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Stsc211960g00003 325 SUPERFAMILY DNA-binding pseudobarrel domain 4 101 IPR015300 -
Stsc211960g00003 325 CDD B3_DNA 9 100 IPR003340 GO:0003677
Stsc211960g00003 325 SMART B3_2 10 102 IPR003340 GO:0003677
Stsc211960g00003 325 SMART B3_2 214 309 IPR003340 GO:0003677
Stsc211960g00003 325 Pfam B3 DNA binding domain 219 308 IPR003340 GO:0003677
Stsc211960g00003 325 Pfam B3 DNA binding domain 16 100 IPR003340 GO:0003677
Stsc211960g00003 325 Gene3D - 5 103 IPR015300 -
Stsc211960g00003 325 MobiDBLite consensus disorder prediction 127 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00003 Stsc-Chr211960 5240 6677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00003 10 307 B3 DNA Binding Superfamily AT3G18990 27.893 1.78e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00003 B3 4.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00003 - - aip:107621185 305.064