Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211960g00003 | ATGGCTTCTCCTTCCACCGTGATCTGTTTCTTCAAGATTGTTCTCAGAAAAACCCTTCAACATGGAATACTAAAGATACCAAAGAAGTTTTGTATAAAATATGGTGATGGTGTGCCAAATCCAGTGTGTCTGAAGACTCCAGATGGCATTCAATGGAAAGTAGATTGGAGTAAGTGTGATGGTAAGATGCTATTTAAGAACGGTTGGAAAGAGTTTGCTGCATATTACTCTTTGGATAATGGCCATATGCTGTGGTTCGAGTACAATGGAACTTCTAAAATTGAAGTACACATACTTGACACGACTGGCCTTGAGATAGACTATCCTTCAACGAACCACAACAGTGATGACAGTTCGGTTGAGATCTCGAATGAACTGCCGAAAACAGTGGATGATGACAACTCGATTGAGGCCGTGAATGAACCGCCACAAAGAGTCCCAGGCCGGCCGAGCAAAAAAGCAAAAGCAGCAGCTGAAAATCCATCATCATCATCACCTAAAAGAGGTGTAGAAAGGGGCTGTAATAAACAAAGGTATCAATCTGAAGAGACAGGTCTTAAGATGCCAACAATTCAAAGTGCCAGAGTTGATATGGATATTATTCAAGCAGCAAAGAAGTTTAAGTCAAAGAATCCCTCTTTCATAATCAAGATAAGGCAAACTGAGCTAACTAGAGCTGCAACAAGCATTCCAGCCGCCTTCTTCAGAGAACACTTTAAGGAAGAAAAGGAGCATCTAAATCTATGCAATGGAAAGAAGCAGTGGCCTGCAACATTGATCTATTATCCAGTTAAGAAAAGCGTCGTCTTGTCCTCTGGTTGGCGCTTGTTCGCTCAAGAAAATAAGTTGAAAGCTGGAGATATTTGTATCTTTGTGCTTGTTTACAGAGAAGGCGCGGAACTTCATGCTTATATTTTTCGAAGAACAATAGAAGGGAAAACTGCAGAAGTTGCAGAGAAGACAAGAACAAGAAATTGA | 978 | 0.408 | MASPSTVICFFKIVLRKTLQHGILKIPKKFCIKYGDGVPNPVCLKTPDGIQWKVDWSKCDGKMLFKNGWKEFAAYYSLDNGHMLWFEYNGTSKIEVHILDTTGLEIDYPSTNHNSDDSSVEISNELPKTVDDDNSIEAVNEPPQRVPGRPSKKAKAAAENPSSSSPKRGVERGCNKQRYQSEETGLKMPTIQSARVDMDIIQAAKKFKSKNPSFIIKIRQTELTRAATSIPAAFFREHFKEEKEHLNLCNGKKQWPATLIYYPVKKSVVLSSGWRLFAQENKLKAGDICIFVLVYREGAELHAYIFRRTIEGKTAEVAEKTRTRN | 325 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211960g00003 | 325 | CDD | B3_DNA | 212 | 307 | IPR003340 | GO:0003677 | |
Stsc211960g00003 | 325 | PANTHER | B3 DOMAIN-CONTAINING | 8 | 296 | - | - | |
Stsc211960g00003 | 325 | Gene3D | - | 195 | 309 | IPR015300 | - | |
Stsc211960g00003 | 325 | ProSiteProfiles | B3 DNA-binding domain profile. | 213 | 309 | IPR003340 | GO:0003677 | |
Stsc211960g00003 | 325 | SUPERFAMILY | DNA-binding pseudobarrel domain | 207 | 308 | IPR015300 | - | |
Stsc211960g00003 | 325 | ProSiteProfiles | B3 DNA-binding domain profile. | 9 | 102 | IPR003340 | GO:0003677 | |
Stsc211960g00003 | 325 | SUPERFAMILY | DNA-binding pseudobarrel domain | 4 | 101 | IPR015300 | - | |
Stsc211960g00003 | 325 | CDD | B3_DNA | 9 | 100 | IPR003340 | GO:0003677 | |
Stsc211960g00003 | 325 | SMART | B3_2 | 10 | 102 | IPR003340 | GO:0003677 | |
Stsc211960g00003 | 325 | SMART | B3_2 | 214 | 309 | IPR003340 | GO:0003677 | |
Stsc211960g00003 | 325 | Pfam | B3 DNA binding domain | 219 | 308 | IPR003340 | GO:0003677 | |
Stsc211960g00003 | 325 | Pfam | B3 DNA binding domain | 16 | 100 | IPR003340 | GO:0003677 | |
Stsc211960g00003 | 325 | Gene3D | - | 5 | 103 | IPR015300 | - | |
Stsc211960g00003 | 325 | MobiDBLite | consensus disorder prediction | 127 | 185 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211960g00003 | Stsc-Chr211960 | 5240 | 6677 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211960g00003 | 10 | 307 | B3 DNA Binding Superfamily | AT3G18990 | 27.893 | 1.78e-32 | 122 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Stsc211960g00003 | B3 | 4.8e-15 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211960g00003 | - | - | aip:107621185 | 305.064 |