Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00002 ATGGCTTCCACTAGCCATAAAAAAAACAAGCATTCTCTTTCCACTGTGATCCGTTTCTTCAAGATTGTTCTCAGAAAAAGCCTTGAAGATGGATATCTTAAAATACCAAACAAATTCAGTAAGAAACATGGTGATGATATGCCAAATCCAGTGCATCTGAAGCCTCCAGATGGAACTCAATGGAAAATAGATTGGACTAATCATGATGGTGAGATTCTCTTTGAAAAGGGTTGGAAAGAGTTTGCTAAATTCTACACTTTGGACAATGGTCATTTGCTGTGGTTTGAGTATGATGGAACTTCTAACATCGAAGTACACATACTCGACATGAGTGGCCTTGAAATCGATTATCCTTCCAATGATCGAATTAGGGACGACTGCATGGTTGATATTTTGGATGAACCGCCACGAAGAGGCCGAGGCCGGCCTAGGAAAAAAGCGAAGGAAGAACAACCAAAGCAATCATGTCCTTCTAAAAGTAAAGTATCCAAAAGTGTCATCAAAACTGAAGTTGTGGAGAGAAACCTCAATGAACAAAACTTGAAGCTTCATGTCAAGAATGAAGAAGATAGTCAATCTGAAGAGACAGCAGAGTTTAAGTTTCCAATAGTTCAATGGGCCAAACCAGATATAGATGTTGTTAGAGAAGCAAGGAAGTTCAAGTCAAAAAATCCTTCTTTCATAATCAAGATTAAGAAAATTCACCAGACAGGATCACCAGCAAGTTTTCCAGTTAGCTTCTTCAGATTGTACTTCGAGAACACGAAGCAGATTGCAAGTCTACATGTTGGAAAGAAGCAGTGGCCTGCAAGATTCGTACATTATCCGTATAAGAAAAGTGCCCTTATCTCGAGCTGGCGCGTGTTCATTAGAGAAAACAACTTAAAAGCCGGAGATGTTTGCATCTTTGAGCTCATTAACAGAGAAGATCCAGAGCTTAAGGTTCATATTCGTCGAAGCCACGAATTAGCGAATTTCAGAAGCTCTTGA 990 0.396 MASTSHKKNKHSLSTVIRFFKIVLRKSLEDGYLKIPNKFSKKHGDDMPNPVHLKPPDGTQWKIDWTNHDGEILFEKGWKEFAKFYTLDNGHLLWFEYDGTSNIEVHILDMSGLEIDYPSNDRIRDDCMVDILDEPPRRGRGRPRKKAKEEQPKQSCPSKSKVSKSVIKTEVVERNLNEQNLKLHVKNEEDSQSEETAEFKFPIVQWAKPDIDVVREARKFKSKNPSFIIKIKKIHQTGSPASFPVSFFRLYFENTKQIASLHVGKKQWPARFVHYPYKKSALISSWRVFIRENNLKAGDVCIFELINREDPELKVHIRRSHELANFRSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00002 329 PANTHER B3 DOMAIN-CONTAINING 11 309 - -
Stsc211960g00002 329 SMART B3_2 231 321 IPR003340 GO:0003677
Stsc211960g00002 329 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc211960g00002 329 MobiDBLite consensus disorder prediction 132 165 - -
Stsc211960g00002 329 Gene3D - 14 112 IPR015300 -
Stsc211960g00002 329 MobiDBLite consensus disorder prediction 132 155 - -
Stsc211960g00002 329 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc211960g00002 329 Gene3D - 210 323 IPR015300 -
Stsc211960g00002 329 SUPERFAMILY DNA-binding pseudobarrel domain 16 111 IPR015300 -
Stsc211960g00002 329 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc211960g00002 329 SUPERFAMILY DNA-binding pseudobarrel domain 220 320 IPR015300 -
Stsc211960g00002 329 CDD B3_DNA 242 319 IPR003340 GO:0003677
Stsc211960g00002 329 ProSiteProfiles B3 DNA-binding domain profile. 266 321 IPR003340 GO:0003677
Stsc211960g00002 329 Pfam B3 DNA binding domain 19 108 IPR003340 GO:0003677
Stsc211960g00002 329 Pfam B3 DNA binding domain 242 320 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00002 Stsc-Chr211960 3112 4980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00002 19 323 B3 DNA Binding Superfamily AT3G18990 25.664 6.26e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00002 B3 6.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00002 - - aip:107621185 458.373