Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211960g00001 ATGGCTTCCAATGCAGTTCTTTTCTTCAAGATTATACTCTCAAAATCTCTTCAACAAGGGATACTTAAGCTCCCAAAGAAATTCACTAGAAAATATGGCGATTCTCTATCAAAGCCTGTGTTTCTCAAGCCTCCAGATGGAACTGAATGGAAAGTAGATTGGACTATGCATGATGCTCAGGTTCTGTTTCAAGATGGTTGGAGAGAGTTTGTTGCATATTACTCTATAAAGCATGGGCATTTCTTGATGTTTGAATACAATGGAAATTCCCATTTTGGGGTACAAATATGTGACATGAGTGGCCTTGAAATAGAGTATCCTTTTAATGTTAATCAGCAAGAAAAGGATAACATTGATGAGATCAGTGATAAAGCAGGTCAAGTGTTCGATGAAATGCCTCAAAGACAAAACAATAGAAGGAAATCACCAATGTCTCAGCTTGATCAAAGCAATGATAATCAGTCAACATCTGCATCAGTCGGGAAAGAATTAGATGATGAAACAGTCGAAGAAGATGAAAGCGAGGATGACATTTCCATTAAAGATAGAAAGGAAACTAAAATGAGTTCAAATGGTGCTCTGGAGGAAGCTGAGAAATTCACCTCAGAAAATCCCTTTTTCATCATAACTGTAACAAAAAAATTTCTGGACCAAAGCAGACCGAATGTGCCAATTGACTTTGTCAAAAGGTACCTCACAAAAATGCAGATTGCCAAGGTAAGGTTTAGGAAGAAATTGTGGCCTATGAAGTTGCTTCCTTATGTAACTAGAAAGAAGTCAATCCGCTTGTCAACCGGTTGGAACATCTTTGCTAAAGCAAGTAAATTGCAAGCTGGAGATGTTTGCATCTTTGAGCTGATCAACATGAAAGATGCAGAGTTTGATGTTCACTTCTTTAGATGTCACCCCTAA 912 0.3783 MASNAVLFFKIILSKSLQQGILKLPKKFTRKYGDSLSKPVFLKPPDGTEWKVDWTMHDAQVLFQDGWREFVAYYSIKHGHFLMFEYNGNSHFGVQICDMSGLEIEYPFNVNQQEKDNIDEISDKAGQVFDEMPQRQNNRRKSPMSQLDQSNDNQSTSASVGKELDDETVEEDESEDDISIKDRKETKMSSNGALEEAEKFTSENPFFIITVTKKFLDQSRPNVPIDFVKRYLTKMQIAKVRFRKKLWPMKLLPYVTRKKSIRLSTGWNIFAKASKLQAGDVCIFELINMKDAEFDVHFFRCHP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211960g00001 303 SUPERFAMILY DNA-binding pseudobarrel domain 200 300 IPR015300 -
Stsc211960g00001 303 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Stsc211960g00001 303 Gene3D - 2 101 IPR015300 -
Stsc211960g00001 303 SUPERFAMILY DNA-binding pseudobarrel domain 5 100 IPR015300 -
Stsc211960g00001 303 ProSiteProfiles B3 DNA-binding domain profile. 206 302 IPR003340 GO:0003677
Stsc211960g00001 303 PANTHER B3 DOMAIN-CONTAINING 6 296 - -
Stsc211960g00001 303 Pfam B3 DNA binding domain 206 300 IPR003340 GO:0003677
Stsc211960g00001 303 Pfam B3 DNA binding domain 9 98 IPR003340 GO:0003677
Stsc211960g00001 303 Gene3D - 185 302 IPR015300 -
Stsc211960g00001 303 MobiDBLite consensus disorder prediction 138 162 - -
Stsc211960g00001 303 SMART B3_2 8 100 IPR003340 GO:0003677
Stsc211960g00001 303 SMART B3_2 206 302 IPR003340 GO:0003677
Stsc211960g00001 303 CDD B3_DNA 205 300 IPR003340 GO:0003677
Stsc211960g00001 303 MobiDBLite consensus disorder prediction 127 195 - -
Stsc211960g00001 303 CDD B3_DNA 7 98 IPR003340 GO:0003677
Stsc211960g00001 303 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211960g00001 Stsc-Chr211960 345 2306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211960g00001 7 302 B3 DNA Binding Superfamily AT3G18990 28.783 3.26e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211960g00001 B3 1.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211960g00001 - - adu:107471968 450.284