Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211956g00005 ATGGATTGTTCCTCAGTACCTCAAACTAAATTACTCCTTGGGAAATTCTTATCTGATATTTCATGGCTAGTGATTGCATCTTTTGTAAAGAAGGCTAAATTTGATGTAAGATCTATGGATAACAAGATTGTGTACCAAGTTTTGGGAGGTAATAATGATTCTCAAATAGATGTTGTGAATTTCAAAGTAGATGGTGATGGTATTGTACAATCCATGGTTTCTCAGATTGATGATACACATGCTACTAAAAAGATTGGTTTTAAACATTGTGATGATGTTTATTCCCCTGAAGATGAAAAGGCAGAACCAAGTTGTAATGTTGAGGGACTAAGGCGGTCGAAGCGACGCCATGTTCAACCGGACCGATACCTTGGTTGTGAGGCTCCGGTGATGAATGTTAGTGCTCCTAGAACCTGGCCTTACAAGATGAGTGCATCGAAAGAGGAAGACGAAAAAGAAGAAGAAGAAGAGCTTGTTCCATTAGCATGTAATAAGCCTTGCTTCCAAGCAAAGTGGACTAAAGAAGATGTTGTTTCCAAGAAGAAAATCATGGAAGGGAAGAAGTTAGGTGATGCAGATCAAGATGGAATCCAAACTCCAGTTCTTGTTCTTCCTCCTCCCAAGAAAGATGAATCACTTCCACTTCCTCATAATCTTCATAATCAAAATGACAAGGGCAGCATGCAAGAAACTGGGAAAGAAGAAAAGATGGAAGAATTTTCTTCAAGAATCCATAGCGGTAATGGCGCCGCAAAGTTACACATGAAGAATTCAGTTGATCTAGATGATATAGATATTGAACTTGGATGGGAATGGACAAATTCCAAGAGAAGAGTTCAAGAGAAAAGAAAGCACCATTCGAGTTCAAGAACATATTCAAATAGTGTCACGAATCTTGATGGTGAAGAAAGATCTTACAAAGGCAGAACCTTGAATGCTGCTTCATACAAGGAAATCATAGATTCATATCTGAGGAAAATTGAAAAAATTCCTACTATGGAAAAAGAGCAACCAAGTATAATGGATCAGTGGATTGCTACAACAAGAGAATGTGATGAACAAAAGAATGAAATGGGAAAATCTCATTTGGAGGAAGAAAAAGAAGAAGAAGAAGAAATTTCTGAAACAGATAGGTTGTGGAGAGAAATGGAAATGTCAATGGCATCAAGTTATCTTGTTGAAGAAGAAACAAAGGATTTAGATGCAGTAGCTCTTGCTGAAACTACAGAAAATTGCAAAGAAGTTTGTCAGCATGAAAATAGATTGGATGATGAAATTGGAATCTACTGCATAAGATGCGGTGTTGTTAGCGTCGACATCAAATGCGTTCTCACAGAATTTCTGCCACAAAATGCTAAAACATGGCAAAGGAGTGGTTCGGAGAAGCCGGAAGGCAACGAAGACGCCGGGGACCCCAAGTTTTTCGCAGCCTCTAATGGTTCTAGAGATGAACCTATGCAAGAAGAAAATGGCAATAATGTTTGGGAGCGAGTACCAGATCTGAAAGAAAAAATGCATGTCCACCAGAGAAAAGCATTTGAGTTTCTTTGGCAAAACATTGCAGGGTCAGTAGAACCATCACAAATGGAGCTACAATCCAAAGCCATTGGAGGTTGTGTGATATCTCATTCTCCGGGAGCCGGAAAAACCTTCCTCGTGATCGCGTTCCTTGTCAGTTACCTGAAGCTTTTCCCAGGGAAAAGGCCACTCATTCTTGCTCCAAAGACTACACTCTACACATGGTACAAGGAGTTCATCAAATGGGAGATTCCTTTACCGGTTTATCTCATCCATGGCCGCTCCTCACACAAAGAGTTCAAAGAAGATACCATGATCATTCCTGGCCTTCCAAAGCCAACTAATGATGTCAAGCATGTTCTTGATTCTATACAAAAGATTCACAAATGGCATGAGCATCCAAGTGTCCTTATCATGGGCTATACATCGTTTCTTTCGCATATGCGCGAGGATTCGAAATTCTCGCACGGAAGGTATATGGCGAAAGTCCTGAGAGAGAGCCCTGGGATCTTGGTTCTTGATGAAGGGCACAATCCTCGCAGCACCAAATCGAATTTGAGAAAAGTTTTGATGAAGGTGAAGACAGAACTTCGAGTTCTCCTCTCTGGAACCTTGTTTCAGAACAATTTCTGTGAATATTTCAATACTTTGTGCTTGGCTAGGCCTAGATTTGTTCATGAAGTTTTGTCCGAGTTAGACGGTAAATACCGGAGTAACCCGAAGATTGCCGAGAAAGCAAGGCATCTGCTGGAGGCACGCGCCAGAAAATTCTTCTTGGATCATATTGCCAAGAGGATAAACCCGAATGAAGGCGACGACACGGCGCAGGGTCTGAATTTGTTGAAGGAACTAACGAATGGATTCATTGATGTGCATGATGGAGGAAACTCTGAAACTCTGCCCGGTTTACAGATCTATACGTTGGTGATGAACACAACTGATATACAGTATAAGATTCTGCTTGAACTGCACAAGAAAATGTGTGAGCGCAATGGTTACCCTTTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCATGGCTAGTGAAAACTGTAGCTTGTGCAGCTAAGTTCTTGAGTGTGGAACAGTTGAGGGAGTTAGATGAAGTTAGGAGTGATTTAAAGAAAGGGTCTAAGGTAAGGTTTGTTCTTAGCCTTGTGAGTCGTGTTTTCTTGAAGGAGAAGGTGTTGATCTTCTGCCATAACATTGCACCAGTGAAGCTGCTTGTGGAAATGTTTGAGAGAGTTTTTCATTGGAGAAAAGACAGAGAGATCTTGGTACTCAACGGGGAGCTTGAATTGTTCGAACGCGGGAAAGTTATCGATAAGTTCGAGGATCCTTGTGGTGTTTCGAGCGTGCTTCTTGCCTCGATCACGGCCTGCGGCGAAGGGATTAGTCTCACGGCGGCTTCGAGGGTGGTCATGTTGGATTCGGAATGGAATCCGTCTAAGACGAAGCAAGCGATCGCGAGGGCCTTCAGACCTGGACAGCAGAAGATGGTGTATGTGTATCAGTTACTGACTTCTGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGTGGGTTTCTTGCATGATATTCAATGAGGAATCTGTGGAGGGTCCTTCACAGAATATTGAGGATGATGTGCTTAGGGATATGGTTGAGGAGGACAAGTATAAATCATTCCATATGATCATGAAGAATGACAAGTATTCTGCAACAATTTGA 3246 0.4159 MDCSSVPQTKLLLGKFLSDISWLVIASFVKKAKFDVRSMDNKIVYQVLGGNNDSQIDVVNFKVDGDGIVQSMVSQIDDTHATKKIGFKHCDDVYSPEDEKAEPSCNVEGLRRSKRRHVQPDRYLGCEAPVMNVSAPRTWPYKMSASKEEDEKEEEEELVPLACNKPCFQAKWTKEDVVSKKKIMEGKKLGDADQDGIQTPVLVLPPPKKDESLPLPHNLHNQNDKGSMQETGKEEKMEEFSSRIHSGNGAAKLHMKNSVDLDDIDIELGWEWTNSKRRVQEKRKHHSSSRTYSNSVTNLDGEERSYKGRTLNAASYKEIIDSYLRKIEKIPTMEKEQPSIMDQWIATTRECDEQKNEMGKSHLEEEKEEEEEISETDRLWREMEMSMASSYLVEEETKDLDAVALAETTENCKEVCQHENRLDDEIGIYCIRCGVVSVDIKCVLTEFLPQNAKTWQRSGSEKPEGNEDAGDPKFFAASNGSRDEPMQEENGNNVWERVPDLKEKMHVHQRKAFEFLWQNIAGSVEPSQMELQSKAIGGCVISHSPGAGKTFLVIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFIKWEIPLPVYLIHGRSSHKEFKEDTMIIPGLPKPTNDVKHVLDSIQKIHKWHEHPSVLIMGYTSFLSHMREDSKFSHGRYMAKVLRESPGILVLDEGHNPRSTKSNLRKVLMKVKTELRVLLSGTLFQNNFCEYFNTLCLARPRFVHEVLSELDGKYRSNPKIAEKARHLLEARARKFFLDHIAKRINPNEGDDTAQGLNLLKELTNGFIDVHDGGNSETLPGLQIYTLVMNTTDIQYKILLELHKKMCERNGYPLELELLITLGSIHPWLVKTVACAAKFLSVEQLRELDEVRSDLKKGSKVRFVLSLVSRVFLKEKVLIFCHNIAPVKLLVEMFERVFHWRKDREILVLNGELELFERGKVIDKFEDPCGVSSVLLASITACGEGISLTAASRVVMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTSDSLEVDKHRRNKWKEWVSCMIFNEESVEGPSQNIEDDVLRDMVEEDKYKSFHMIMKNDKYSATI 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211956g00005 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 732 IPR027417 -
Stsc211956g00005 1081 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 91 1078 IPR044567 GO:0080188
Stsc211956g00005 1081 SMART helicmild6 915 1004 IPR001650 -
Stsc211956g00005 1081 CDD SF2_C_SNF 886 1015 - -
Stsc211956g00005 1081 CDD DEXHc_ATRX-like 505 771 - -
Stsc211956g00005 1081 Gene3D - 477 765 IPR038718 -
Stsc211956g00005 1081 MobiDBLite consensus disorder prediction 277 296 - -
Stsc211956g00005 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 806 1063 IPR027417 -
Stsc211956g00005 1081 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 894 1052 IPR001650 -
Stsc211956g00005 1081 Gene3D - 811 1080 IPR027417 -
Stsc211956g00005 1081 SMART ultradead3 501 737 IPR014001 -
Stsc211956g00005 1081 Pfam Helicase conserved C-terminal domain 889 1003 IPR001650 -
Stsc211956g00005 1081 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 530 729 IPR014001 -
Stsc211956g00005 1081 Pfam SNF2-related domain 505 766 IPR000330 GO:0005524|GO:0140658
Stsc211956g00005 1081 MobiDBLite consensus disorder prediction 454 490 - -
Stsc211956g00005 1081 MobiDBLite consensus disorder prediction 206 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211956g00005 Stsc-Chr211956 31952 35517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211956g00005 933 1021 RAD5 or RAD16-like Gene Family AT5G05130 42.222 3.17e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc211956g00005 SNF2_N 4.2e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211956g00005 K10875 - gmx:100811703 1149.42