Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211952g00005 ATGGAATCTTCCCCCACCACTCTCACCGGACTCCTCCGCCGAGCAGCTGAAACCTTCCCCTCTCGCCGCGCCATCTCCGTCGCCGGAAAGTATGATCTCACTCACTCCCGCCTCCAACATCTCGTCGATGTCGCCGCCAACCGCCTCATCTCCGCCGGCGTGAAGCCCGGCGATGTAGTCGCTCTCACCTTCCCCAACACAGTCGAGTTTGTGATAACGTTCTTAGCTGTTATACGAGCGCGTGCGACTGCTGCACCACTAAACCCCGCATATACTGCGGAAGAGTTCGAGTTTTATCTGTCTGACTCAGAATCCAAGCTTCTAGTAACTTCTTCCGAAGGAATCAAGCCGGCTCAAGCCGCCGCTTCCAAGCTCACCATCCCTTGCGCCGTCGCTTCATTAAATACACCCGAACAACCTGATAATGAAGCAGCCGAAGCCGAGTTCACCCTCTCCCTCAGCCACCGTCCTGACTCGGACTCTAACTCGGACCACGACTCGCTCTCCGGACTCACCAACGATACTTCCGACGTGGCACTCTTCCTCCACACCTCCGGCACCACGAGCCGCCCCAAGGGTGTGCCGCTGACTCAGCACAACCTCTTCTCCTCCGTCCGCAACATTCAATCGGTGTACAAACTCACTGAGTCAGACTCGACGGTGATCGTGCTCCCTCTCTTCCACGTCCACGGATTGATCTGCGGATTACTCAGCTCGATCGGCGCCGGAGCTTCCGTGGCCTTGCCGGCGGCGGGGAGATTCTCGGCGTCGACGTTCTGGAAAGACATGATCAAGTACAACGCCACGTGGTACACGGCGGTTCCGACGATACACCAGATCGTACTGGATCGCCACCAGAGCAACCCCGAACCGGTTTACCCGAAGCTCCGGTTTATTCGTAGCTGCAGCGCGTCACTGGCACCGGCTATTCTAGGTCGATTAGAGGAGGCTTTCGGTGCACCGGTTTTGGAGGCTTATGCGATGACGGAGGCGTCTCATTTAATGGCTTCGAATCCGTTGCCGGAAGATGGGCCCCACAAGGCCGGGTCAGTTGGAAAGCCCGTGGGCCAAGAGATGGCCATATTGGATGAAACGGGCCGGGTCTTGGAAGCTGAGGTTAACGGTGAGGTTTGTATTAGGGGTCCGAATGTGACCCAAGGGTATAAGAATAACCCAGATGCTAATACGGCAGCGTTTCAGTTTGGTTGGTTCCACACCGGTGATCTTGGTTACTTTGATTCTGACGGTTATTTGCATCTTGTGGGTCGGATCAAGGAGCTCATTAACCGTGGAGGAGAGAAAATATCACCAATAGAAGTGGATGCTGTCCTTCTATCTCATCCTGATATTGCTCAGGCGGTTGCTTTCGGAGTGCCCGATGACAAATACGGCGAGGAGATAAACTGTGCAATTATCCCAAGAGAAGGGTCAAACATTGATGAAGACGAGGTGCTGAGATTTAGCAAGAAGAATCTTGCATCTTTCAAAGTCCCCAAGAAGGTCTTCATCACTGATTCATTGCCCAAGACAGCCACTGGCAAGATTCTACGCCGTCTAGTAGCTGAACATTTTGTTTCTCAAAAATGA 1587 0.5394 MESSPTTLTGLLRRAAETFPSRRAISVAGKYDLTHSRLQHLVDVAANRLISAGVKPGDVVALTFPNTVEFVITFLAVIRARATAAPLNPAYTAEEFEFYLSDSESKLLVTSSEGIKPAQAAASKLTIPCAVASLNTPEQPDNEAAEAEFTLSLSHRPDSDSNSDHDSLSGLTNDTSDVALFLHTSGTTSRPKGVPLTQHNLFSSVRNIQSVYKLTESDSTVIVLPLFHVHGLICGLLSSIGAGASVALPAAGRFSASTFWKDMIKYNATWYTAVPTIHQIVLDRHQSNPEPVYPKLRFIRSCSASLAPAILGRLEEAFGAPVLEAYAMTEASHLMASNPLPEDGPHKAGSVGKPVGQEMAILDETGRVLEAEVNGEVCIRGPNVTQGYKNNPDANTAAFQFGWFHTGDLGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEDEVLRFSKKNLASFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211952g00005 528 PANTHER ACYL-COA SYNTHETASE 7 526 - -
Stsc211952g00005 528 FunFam 4-coumarate--CoA ligase 2 426 527 - -
Stsc211952g00005 528 Gene3D - 424 526 IPR045851 -
Stsc211952g00005 528 Pfam AMP-binding enzyme 13 430 IPR000873 -
Stsc211952g00005 528 Pfam AMP-binding enzyme C-terminal domain 439 514 IPR025110 -
Stsc211952g00005 528 ProSitePatterns Putative AMP-binding domain signature. 181 192 IPR020845 -
Stsc211952g00005 528 CDD FACL_fum10p_like 20 522 IPR045310 GO:0016874
Stsc211952g00005 528 FunFam Peroxisomal-coenzyme A synthetase 7 423 - -
Stsc211952g00005 528 SUPERFAMILY Acetyl-CoA synthetase-like 5 525 - -
Stsc211952g00005 528 Gene3D - 2 423 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211952g00005 Stsc-Chr211952 10380 13994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211952g00005 6 527 Monolignol Biosynthesis Gene Families AT4G05160 29.868 1.94e-62 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211952g00005 K22133 - gmx:100779306 845.884