Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211949g00004 ATGAAGTCGCGGTTCTCCATTGTTGTGCTTGTACTTCTAAGCTTCATAGTTTCACTCTTCGGATCGATTGTAGCTGATTTAAACTCTGACAAACAAGCTCTCTTGGAATTTGCTTCAGCCGTTCCACATGCACCAAGGCTGAACTGGAATGAGTCTACTTCAGTTTGCAACTCATGGATTGGTGTGACTTGTAACTCAAACAGAACTCGAGTCACTGGAATCCATCTCCCGGGAATTGGACTAACCGGTTCGATTCCGGAGAACACCTTAGGAAAGCTAGACACTCTAAGAGTCCTTAGCCTTCATTCAAATGGCCTTAAAGGAAGCCTTCCTTCTGACATAATTTCCATTCCTTCACTCCAATTTGCACTACTTCACCACAATAACTTCTCTGGTCCAATTCCTTTCTCTGTCTCCCCTAAACTCGTCGCGTTTGATGTTTCCTTTAACTCTTTCTCTGGAAGAATTCCACCATCATTTCAGAATCTGAGAAGACTCACCTGGTTGTATTTACAAAACAACAACATATCTGGAACTATCCCTGACTTCAACCTTCCTAGGCTTAAACAATTGAATTTGAGCTATAATAACTTGAATGGAACAATTCCAAATTCCATTAAGACATTCCCATACACTTCTTTCGTAGGTAATTCGCGCTTATGTGGACCGCCTCTCAATAATTGCTCATCAATCTCCCCTTCTCCATCTCCTTCCCCTGAGTATCAACCATCCTCTCCATCAACTACACAAGATCAAAAGAATTCTCCTCGTAAGAATAACTTTGGCCTAGCTACTATACTTGCTCTTGTCATTGGAGGCTTTGCATTTCTCTCCCTGCTAGTTTTAGTGTTCTTTGTATGCTGTTTGAAGCGAAAACCAAAAGATGGTACTAAAAAAAGTAGTGGCATACTCAAAGGGAAGGGATCTTGTGCTGGAAAGACTGAGATCTCAAAGAGTTTTGGGAGTGGAGTTCAAGCGGCTGAAAAGAACAAGTTGTTCTTCTTTGAAGGTTCATCTGACAGCTTTGATCTTGAGGACTTATTGAAGGCTTCGGCCGAAGTTCTTGGTAAAGGGAGTTATGGAACAGCATACAAGGCTGTTTTGGAGGATGGAACAACCGTGGTAGTTAAGCGGTTGAAGGAAGTAGTAGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAAATTGTTGGGAGGATCGGACGCCACCCAAATGTCATGCCACTTCGTGCTTATTACTATTCCAAAGATGAGAAGCTTCTAGTTTACAACTTCATGCTTGGAGGTAGCTTGTTTCACTTGTTGCATGGAAACAGGGGTGCAGGTGCAACAAGAACTCCATTAGACTGGGATTCAAGGGTGAAGATTTCACTTGGAGCAGCCAAGGGAATTGCATTGATTCACTCTGAATGCGGTCCAAAGTTCACACATGGCAACATCAAGTCCACCAATGTTCTCATATCCCAAGAACTTGATGCCTGCATCTCTGATATTGGCTTGCCTCCACTGATGAACACTCCGGCAACAATGTCAAGAGCCAATGGCTACCGTGCTCCCGAAGTAACCGACACGAAGAAGATCACACAAAAATCTGATGTGTACAGCTTTGGTGTGCTACTTCTTGAAATGTTGACAGGAAAGACAGCAATGAGGTATCCGGGGCATGAAGACACCGTCGATCTACCAAGGTGGGTGAAGTCTGTTGTTAGAGAGGAATGGACAGCTGAAGTTTTCGACGAGGAGCTTCTAAGAGGGCAATATATTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCTTGTGTTTCTAAGACACCTGATATGAGACCTAAAATGGATGAAGTTGTTAGGATGATAGAGGAAATTAAGCACCCTGAGACAAAGAACAGGCCGTCCTCTGAATCGGAGTCTAATGTGCAAACACCATGA 1929 0.4349 MKSRFSIVVLVLLSFIVSLFGSIVADLNSDKQALLEFASAVPHAPRLNWNESTSVCNSWIGVTCNSNRTRVTGIHLPGIGLTGSIPENTLGKLDTLRVLSLHSNGLKGSLPSDIISIPSLQFALLHHNNFSGPIPFSVSPKLVAFDVSFNSFSGRIPPSFQNLRRLTWLYLQNNNISGTIPDFNLPRLKQLNLSYNNLNGTIPNSIKTFPYTSFVGNSRLCGPPLNNCSSISPSPSPSPEYQPSSPSTTQDQKNSPRKNNFGLATILALVIGGFAFLSLLVLVFFVCCLKRKPKDGTKKSSGILKGKGSCAGKTEISKSFGSGVQAAEKNKLFFFEGSSDSFDLEDLLKASAEVLGKGSYGTAYKAVLEDGTTVVVKRLKEVVVGKKEFEQQMEIVGRIGRHPNVMPLRAYYYSKDEKLLVYNFMLGGSLFHLLHGNRGAGATRTPLDWDSRVKISLGAAKGIALIHSECGPKFTHGNIKSTNVLISQELDACISDIGLPPLMNTPATMSRANGYRAPEVTDTKKITQKSDVYSFGVLLLEMLTGKTAMRYPGHEDTVDLPRWVKSVVREEWTAEVFDEELLRGQYIEEEMVQMLQIALACVSKTPDMRPKMDEVVRMIEEIKHPETKNRPSSESESNVQTP 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211949g00004 642 FunFam pollen receptor-like kinase 1 317 424 - -
Stsc211949g00004 642 Pfam Leucine Rich repeats (2 copies) 165 202 IPR025875 -
Stsc211949g00004 642 PANTHER OS05G0588300 PROTEIN 8 634 - -
Stsc211949g00004 642 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Stsc211949g00004 642 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Stsc211949g00004 642 Gene3D Phosphorylase Kinase; domain 1 315 424 - -
Stsc211949g00004 642 Gene3D Ribonuclease Inhibitor 140 230 IPR032675 -
Stsc211949g00004 642 MobiDBLite consensus disorder prediction 621 642 - -
Stsc211949g00004 642 Gene3D Transferase(Phosphotransferase) domain 1 425 641 - -
Stsc211949g00004 642 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 425 633 - -
Stsc211949g00004 642 Pfam Protein kinase domain 353 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211949g00004 642 ProSitePatterns Protein kinases ATP-binding region signature. 355 386 IPR017441 GO:0005524
Stsc211949g00004 642 CDD STKc_IRAK 355 622 - -
Stsc211949g00004 642 ProSiteProfiles Protein kinase domain profile. 349 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211949g00004 642 FunFam Leucine-rich repeat receptor-like protein kinase 140 228 - -
Stsc211949g00004 642 MobiDBLite consensus disorder prediction 231 256 - -
Stsc211949g00004 642 SUPERFAMILY L domain-like 40 224 - -
Stsc211949g00004 642 FunFam Leucine-rich repeat receptor-like protein kinase 29 139 - -
Stsc211949g00004 642 SUPERFAMILY Protein kinase-like (PK-like) 353 622 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211949g00004 Stsc-Chr211949 25033 28652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211949g00004 5 640 Receptor kinase-like Gene Family AT5G58300 58.385 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc211949g00004 Pkinase 4.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211949g00004 - - aprc:113868460 993.03