Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc211947g00006 | ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTTCACGGAACGCCGGTGTATTACTATTGCCCGCCGGCTTTGGAAGAGCGTGAGTCTCTAACCTCAAACGATGGTAATAGTACGGCTGCTTCGCTCGCCACTGGACTGTTCATCGGCTTGAACTTGGAATCATCCATACCAGATACTTATCAGTCCCCTCCTGCGCCTCTACCGTATGATACTATCTTGAGAGATCCTGCATCAACAGATTCTGAGTCTGGCAGAGAAACCATTAGTGGTAGTAGTTTCGAAACTTTAGTTACATGTGAAGATCTTGAAGAATCAGATTGTAAAGCTCAATCTAAATCAGCATCATTATCTCCGAGGAAGCCGGAAGCTTTAAAATCGAATGAATCTCATGCATTGGTGACAGAAGAAGAGGATGTATGTCCAATTTGTCTAGAAGAATATGATGCTGAGAATCCTAAGTCACTGACGAAATGCGACCACCACTTTCACCTGTCATGCATTCTTGAGTGGATGGAAAGAAGCGACTCGTGTCCCATATGCGATCAGGTTTGGATTCTTTTGCATCAATTCCTCAATAGTTATATAAAAACGTTAGTTGTTGGCTCACTAGTCCGCTTAAGCAAGTGTTGTGCATACGGCAACTCATTGGCCAGCCGCAAACCCTTAAATGGAGTTCAGATCCGCGGTGGATTAGTCGTCGGACTGTCGGGTTGGGGGATACCATGGGAAACCAAAATAAAAATAGCTACATGA | 759 | 0.4466 | MGGCCCSARKPHLHGTPVYYYCPPALEERESLTSNDGNSTAASLATGLFIGLNLESSIPDTYQSPPAPLPYDTILRDPASTDSESGRETISGSSFETLVTCEDLEESDCKAQSKSASLSPRKPEALKSNESHALVTEEEDVCPICLEEYDAENPKSLTKCDHHFHLSCILEWMERSDSCPICDQVWILLHQFLNSYIKTLVVGSLVRLSKCCAYGNSLASRKPLNGVQIRGGLVVGLSGWGIPWETKIKIAT | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc211947g00006 | 252 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 39 | 186 | - | - | |
| Stsc211947g00006 | 252 | SUPERFAMILY | RING/U-box | 132 | 190 | - | - | |
| Stsc211947g00006 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 188 | IPR013083 | - | |
| Stsc211947g00006 | 252 | SMART | ring_2 | 142 | 182 | IPR001841 | - | |
| Stsc211947g00006 | 252 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 118 | 187 | - | - | |
| Stsc211947g00006 | 252 | CDD | RING-H2_AIRP1-like | 138 | 185 | - | - | |
| Stsc211947g00006 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 183 | IPR001841 | - | |
| Stsc211947g00006 | 252 | MobiDBLite | consensus disorder prediction | 61 | 90 | - | - | |
| Stsc211947g00006 | 252 | Pfam | Ring finger domain | 141 | 182 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc211947g00006 | Stsc-Chr211947 | 34589 | 37387 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc211947g00006 | 1 | 188 | C3H Transcription Factor Family | AT4G00335 | 57.447 | 4.92e-71 | 214 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc211947g00006 | - | - | gmx:100804435 | 320.087 |