Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211945g00005 ATGGAAGCAATGTGTCAAATTCACCATGTCAATGTAGCTCGCCTGGTCGGATATTGTTCGGATGGATCTAGAAGAGCTTTGGTATACGAATTTTTACCAAACTGTTCCTTGCAAAAAGTCATTTCCTCAGCAGACACCAAAGATGTCTTTCTAGGCTGGGAAAAGCTACAAGATATTGCTCTTGGCATAGCCAAGGAAATTGAGTATCTTCACAAAGGGTGTGAGAAAAGAATCTTACATTTTGACATCAAGCCTCATAATGTACTGCTAGATAGCAATTTCACACAAAAAATATCTGATTTTGGGTTAGCAAAGCTCTGTCCCATGGATCAAAGTATAGTGTCAATGACCACAGCTAGAGATACTTTGGGCTACATTGCACCAGAGGTATTTTCTAGGAACTTTGGCTATGTATCGTGTAAATCGGATGTATATAGCTATGGAATGCTGCTGCTTGAGATGGTTAGTGAAAGAAAAATCACTGATGTCACAAAAGAAAATAGCAGCCATGTTTATTACCCTAAATGGATTTACAATCTTTTAGATACCAAAGAAGACATTAAAATCCATGTGAAAGGAGATGAAGACACTAGAGTTGCAAAGAAGCTATCAATTGTGGGACTTTGGGAGGGTTTAGATATGCCTCCTAATCCTTTTACCTCTACTACTACAATCAAAACAAGGGCCATATTTTGTAATGGAAGTCTGAACCAAGAACTAGATGTTATCTCAGAAATAGAGTGA 744 0.3804 MEAMCQIHHVNVARLVGYCSDGSRRALVYEFLPNCSLQKVISSADTKDVFLGWEKLQDIALGIAKEIEYLHKGCEKRILHFDIKPHNVLLDSNFTQKISDFGLAKLCPMDQSIVSMTTARDTLGYIAPEVFSRNFGYVSCKSDVYSYGMLLLEMVSERKITDVTKENSSHVYYPKWIYNLLDTKEDIKIHVKGDEDTRVAKKLSIVGLWEGLDMPPNPFTSTTTIKTRAIFCNGSLNQELDVISEIE 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211945g00005 247 SMART serkin_6 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211945g00005 247 Pfam Protein kinase domain 2 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211945g00005 247 Gene3D Transferase(Phosphotransferase) domain 1 1 198 - -
Stsc211945g00005 247 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 209 IPR045874 GO:0004672
Stsc211945g00005 247 FunFam Os07g0541700 protein 32 123 - -
Stsc211945g00005 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672|GO:0006468
Stsc211945g00005 247 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211945g00005 247 SUPERFAMILY Protein kinase-like (PK-like) 2 179 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211945g00005 Stsc-Chr211945 32073 33256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211945g00005 3 219 Receptor kinase-like Gene Family AT5G38280 44.672 2.63e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc211945g00005 Pkinase 4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211945g00005 - - tpra:123914140 368.622