Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211944g00004 ATGTTGCATTTCAACAAGGGCGAGGCGGTGGAGGCCACACACCCTAACAACCCAACCAAACGTAACCGTCTCTACCCGGCTTCCGTTCTCCGCACCACCAACAACAACCGCCGCCTCCTCCTCCAATACCACACTCTCTTCTCCGATCACCCTCCTAATAACCCCCTCCGCTGCTGGCTCCACCTCGCTTCAGTCGCTTGCGTCAGGCCCAAGCCTCCCGACTTCCTCAACCCCTGGTTTAAGGTCGGCGATCACGTCGACGCCTTCTGCGAAACTAACCTCCCTCCCGGCGGCGGCGCATGGTGCTCTGCCACTGTCGAGGCCATCCTCGAGAACTCCAAGTACGCGGTGTCGTTTTGGGACGACAACGGGAATGGGAAGACGGAGCGTGGCGTTGTTGAACAATGTAGGTTGCGACTTCACCGTGAATGGGTCCATGGAAACTGGGTCCCACCTCTTCCATATCAAACGGATAATAACAATCTCCAATATGCATCAAGCAAGCCAAAGAAACTCAAAGCTGATGAAGCCTATATGGATCAGCCACTTGAGATTGTGACGATGACAAATACAGGAAATTTAAGATTTAAAATCAAATATAGCAGGAGACCAGTAAAAGAGTCAAAGTTTAAGAAAGGGAGAATGGTGGAAGTCAGGGATGAGAATGAAGGTTTTGAGGGTGCTTGGTTCATTGGTACTATTGTTAGCTCAGTAGGTAAAGACAGGTTTCTTGTAGAATTTAGGGACCTCATAACAGATGATGGAACTCATCAGCTCTTGAAAGAAGAAGTCCATGAAGATTTTATTAGGCCCTGTCCACCTGAAGTTCCCTCTGTTAGTTCTTTCAAACAGTTTCAAGAGGTTGATGCATGGTATAATGATGCTTGGTGGGAAGGTGTGGTTCTTGAAGTGGTAAATAGCAGAGAGTGTTTTGTTTCCTTCATTCACAAAGATGTATTGAGATTTGAAAATTCCAAGCTAAGACCTCATCAGGATTGGTTTGATGGAAAATGGGTCATGGCATCTAAGGAGTCAAGTGAGCTGACAAAGAAGTTTGGAGATGTGATGTCAAAAGCCAAGAATCTCACTGGAAATAAAATAATCTTAAAATGTCTGAAGTCTCGCGAGCCAGAGCCGCAAAAGGTGCCACGAGTTCTAATGTCGATGTCCATAAACACCAGCATCAAACTTGCATCGCATTTATGTAAAGGTGCAAAGGTAGAAGTCACAAGTGATGAAGAAGGTTACCAAGGTGCCTGGTACACCGCCATCGTTGTTAACTCTTTACAGAACGGCAGGTATGTGGTGGAGTATCTCACCCTGAAAACTGACGACTTAACTGAACAACTGAAAGAGGAAGCAGATGCTTCAAATATCAGGCCAGTTCCACCAGACATTCAACATCGTCATCGCTATGCGCTGCGTGAACGGGTTGACGCTTGGTTCAATGATGGATGGTGGGAAGGCCAGGTATGCGGTTTCTCCGGCTTCAATTATAGGATTTACTTTTGGCCTACAAAGGAGGAGCTGGAATTTGAACATTGTCATCTAAGGCCTCATAAAAAATGGATTGATGGAAGATGGGTACATGCTCCTTTTGTATAA 1605 0.4642 MLHFNKGEAVEATHPNNPTKRNRLYPASVLRTTNNNRRLLLQYHTLFSDHPPNNPLRCWLHLASVACVRPKPPDFLNPWFKVGDHVDAFCETNLPPGGGAWCSATVEAILENSKYAVSFWDDNGNGKTERGVVEQCRLRLHREWVHGNWVPPLPYQTDNNNLQYASSKPKKLKADEAYMDQPLEIVTMTNTGNLRFKIKYSRRPVKESKFKKGRMVEVRDENEGFEGAWFIGTIVSSVGKDRFLVEFRDLITDDGTHQLLKEEVHEDFIRPCPPEVPSVSSFKQFQEVDAWYNDAWWEGVVLEVVNSRECFVSFIHKDVLRFENSKLRPHQDWFDGKWVMASKESSELTKKFGDVMSKAKNLTGNKIILKCLKSREPEPQKVPRVLMSMSINTSIKLASHLCKGAKVEVTSDEEGYQGAWYTAIVVNSLQNGRYVVEYLTLKTDDLTEQLKEEADASNIRPVPPDIQHRHRYALRERVDAWFNDGWWEGQVCGFSGFNYRIYFWPTKEELEFEHCHLRPHKKWIDGRWVHAPFV 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211944g00004 534 CDD Tudor_Agenet_AtDUF_rpt2_4 474 519 - -
Stsc211944g00004 534 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211944g00004 534 CDD Tudor_Agenet_AtDUF_rpt1_3 403 464 - -
Stsc211944g00004 534 Gene3D - 394 470 - -
Stsc211944g00004 534 CDD Tudor_Agenet_AtDUF_rpt2_4 286 329 - -
Stsc211944g00004 534 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 168 - -
Stsc211944g00004 534 Pfam Agenet domain 213 274 IPR008395 -
Stsc211944g00004 534 Pfam Agenet domain 83 141 IPR008395 -
Stsc211944g00004 534 Pfam Agenet domain 404 464 IPR008395 -
Stsc211944g00004 534 CDD Tudor_Agenet_AtDUF_rpt1_3 210 274 - -
Stsc211944g00004 534 SMART agenet_At_2 280 335 IPR014002 -
Stsc211944g00004 534 SMART agenet_At_2 78 146 IPR014002 -
Stsc211944g00004 534 SMART agenet_At_2 399 467 IPR014002 -
Stsc211944g00004 534 SMART agenet_At_2 470 525 IPR014002 -
Stsc211944g00004 534 SMART agenet_At_2 208 277 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211944g00004 Stsc-Chr211944 8355 10922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211944g00004 411 523 PHD Transcription Factor Family AT5G58610 29.412 9.42e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211944g00004 - - adu:107483399 899.042