Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211939g00003 ATGTACACCCCTAGGAAACAAGCAACTATACTAAAATGGTTTTGGGAAAACTGCATCCACGTTGAGCTTTATCCAACCAAGCTTTGGAGGAAGGAACCCAACCAATCAAATCTTCTCTGGCTTAGCGGGGTTTTTTTATTTGACGGGTTCAAAATCCTAGCTCAACCCGTCTTTTTGCAAGTTTGGCATGGTAGACCGATTCAGCGGGTTCGACCCGTTTTGCCACCCCTAGTTAACACATACAACAAACGGCAGGGCAGCTCCGCCGGCAATATTGTTTGCAAGTGCTTCAAATACTGCTTGAGCTGCCTCTGCTACGAATGCATGCTTTTGGTGTATGAGTATTTGGAAAGAGGAAGCTTGTTCTATAACTTGGCCAATAAGATTGAAGCTCAAGTTGAATTGGAGAAGGAGGTGAAGATCATTAAAGGGACAGCATATGCTCTTACTCACATGCATCGTCATTGTACTCCTCCTATTGTTCATAGAGATGTCAACAGCAACAATATTTTGCTAAACTCGGAGTTAGAAGCTTATGTATCAGATTTCTCGACACAGCAAGACTTCTTGATCCTGATTCATCTAATCAAACTCTTCTAG 600 0.4267 MYTPRKQATILKWFWENCIHVELYPTKLWRKEPNQSNLLWLSGVFLFDGFKILAQPVFLQVWHGRPIQRVRPVLPPLVNTYNKRQGSSAGNIVCKCFKYCLSCLCYECMLLVYEYLERGSLFYNLANKIEAQVELEKEVKIIKGTAYALTHMHRHCTPPIVHRDVNSNNILLNSELEAYVSDFSTQQDFLILIHLIKLF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211939g00003 199 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211939g00003 199 SUPERFAMILY Protein kinase-like (PK-like) 102 184 IPR011009 -
Stsc211939g00003 199 Gene3D Transferase(Phosphotransferase) domain 1 86 190 - -
Stsc211939g00003 199 PANTHER LEUCINE RICH REPEAT KINASE 2 95 185 - -
Stsc211939g00003 199 Pfam Protein tyrosine and serine/threonine kinase 103 187 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211939g00003 Stsc-Chr211939 31918 34134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211939g00003 93 187 Receptor kinase-like Gene Family AT4G08850 44.792 2.30e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc211939g00003 PK_Tyr_Ser-Thr 1.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211939g00003 - - aip:110269304 125.176