Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211930g00006 ATGAAGTTCATTTCTAGATCAGTGTCTCCTTTCTTGTTCATCTTAGTTTTTATTTTTATTTTCCCACTGTCTATTATTGCTGCTGATCTAAGCTCAGACAAGCAAGCTCTTCTTGATTTTGCTAATGCCATTCCTCACCGCCGAAATCTTCAGTGGAATCCTGCATCCTCAATTTGTACATCTTGGGTAGGCATCACTTGCAATCAAAATGGAACTCGTGTTATTTCCGTCCGGCTCCCTGGAGTTGGACTAGTCGGCACCGTTCCGACCAACACACTTGGCAAGCTTGATGCTGTAAAAATCATTAGCCTTAGATCCAACCTACTCGGTGGAAATCTGCCTGCTGATATTGCTTCCCTTCCTTCTCTCCAGTTTCTTTATCTGCAGCATAACAACCTTTCAGGTGATATACCTTCCTCATTGTCAACTCAACTCAATGTACTCGATTTATCATATAACGCCTTCACCGGAAGCATTCCAAAGACCCTGCAAAATTTGACAGAATTAACTAGTTTGAATCTCCAGAACAACTCACTATCTGGAGAGATACCTGATCTCAATGGTACCACTCTCAGGAATTTGAATTTAAGCTACAACAATTTGAATGGTTCTATCCCTTCAGCTCTTCAGGATTTTCCCAACTCCTCTTTTGAAGGAAACATTCAGTTATGTGGTCCACCTTTAAAGTCATGCTCCGGGGTTCCACCTGCAGCTCCGCCGGCTGTGACACCAGCTCCACGGCCATCGATTGGAAGATCAAAGAATAAACTGAGTAAAGTAGCTATTATTGCAATCGCTGCTGGAGGAGGTGTGCTGCTATTTCTTATAGCTCTTGTTATTGTTGTTTGCTGTGTAAAGAAGAAAGATGAGGAGGAAGAAGCCCCTAGTACAGTTAAAGGGAAGGGTTCTATTGGAGGTAGGAGCGAGAAGCCTAAAGAGCTGTTCGGTAGTGGAGTGCAAGAGCCTGAGAAGAACAAGCTGGTTTTCTTTGAGGGAAGCTCTTACAATTTTGATCTTGAGGATTTGCTAAGAGCTTCGGCCGAGGTTTTGGGAAAAGGTAGTTATGGAACTGCATACAAGGCTATATTAGAGGAGTCGACGACAGTTGTGGTGAAAAGATTGAAGGAAGTTGTGGTGGGTAAGAAGGACTTTGAGCAGCAGATGGAGATCATTGGAAGGGTTGGACAGCACCAAAATGTGGTGCCTCTTCGCGCTTATTATTATTCGAAAGATGAAAAGCTTCTTGTTTATGACTATATCCCCAGTGGCAACTTATCCTCACTCTTGCATGGCAACAGGTCAGGAGGCAGAACTCCATTAGATTGGGACACACGTCTGAAAATCACTCTCGGAACAGCCAGAGGACTTGCTCACCTTCATTCTGTTGGTGGTCCGAAATTCGCACATGGAAACATTAAGTCCTCAAATGTCCTAATCAACCAAAATAAAGATGGCTGCATTTCTGATTTTGGCCTAGCCCCTCTTATGAATGTGCCTGTATCACCTTCAAGAGCCGTAGGTTACCGTGCGCCGGAGGTGGTTGAGACCCGAAAGCACTCTCAAAAATCAGATGTGTACAGCTTCGGTGTCCTACTGCTCGAGATGCTTACCGGGAAAGCGCCACTTCAGTCTCCCGGACGTGAGGACATGGTTGATCTGCCTAGGTGGGTCCAATCTGTTGTTAGGGAAGAATGGACGGCCGAGGTTTTCGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTTCAAATGCTGCAAATAGCCATGGCCTGTGTAGCAAAGATGCCGGATATGCGGCCAAACATGGATGAAGTGATGAGAATGATAGAAGAGGTCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGTATAAATCCAAGGACTCAAATGTTCAAACTCCATAA 1920 0.4479 MKFISRSVSPFLFILVFIFIFPLSIIAADLSSDKQALLDFANAIPHRRNLQWNPASSICTSWVGITCNQNGTRVISVRLPGVGLVGTVPTNTLGKLDAVKIISLRSNLLGGNLPADIASLPSLQFLYLQHNNLSGDIPSSLSTQLNVLDLSYNAFTGSIPKTLQNLTELTSLNLQNNSLSGEIPDLNGTTLRNLNLSYNNLNGSIPSALQDFPNSSFEGNIQLCGPPLKSCSGVPPAAPPAVTPAPRPSIGRSKNKLSKVAIIAIAAGGGVLLFLIALVIVVCCVKKKDEEEEAPSTVKGKGSIGGRSEKPKELFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKKDFEQQMEIIGRVGQHQNVVPLRAYYYSKDEKLLVYDYIPSGNLSSLLHGNRSGGRTPLDWDTRLKITLGTARGLAHLHSVGGPKFAHGNIKSSNVLINQNKDGCISDFGLAPLMNVPVSPSRAVGYRAPEVVETRKHSQKSDVYSFGVLLLEMLTGKAPLQSPGREDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPNMDEVMRMIEEVRQSDSENRPSSEEYKSKDSNVQTP 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211930g00006 639 ProSitePatterns Protein kinases ATP-binding region signature. 350 381 IPR017441 GO:0005524
Stsc211930g00006 639 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Stsc211930g00006 639 SUPERFAMILY Protein kinase-like (PK-like) 348 622 IPR011009 -
Stsc211930g00006 639 CDD STKc_IRAK 350 614 - -
Stsc211930g00006 639 FunFam Leucine-rich repeat receptor-like protein kinase 143 231 - -
Stsc211930g00006 639 ProSiteProfiles Protein kinase domain profile. 344 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211930g00006 639 FunFam Leucine-rich repeat receptor-like protein kinase 32 142 - -
Stsc211930g00006 639 SUPERFAMILY L domain-like 34 214 - -
Stsc211930g00006 639 MobiDBLite consensus disorder prediction 294 317 - -
Stsc211930g00006 639 Gene3D Phosphorylase Kinase; domain 1 314 419 - -
Stsc211930g00006 639 PANTHER OS05G0588300 PROTEIN 11 627 - -
Stsc211930g00006 639 Pfam Protein kinase domain 347 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211930g00006 639 MobiDBLite consensus disorder prediction 614 639 - -
Stsc211930g00006 639 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Stsc211930g00006 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 626 - -
Stsc211930g00006 639 ProSiteProfiles Leucine-rich repeat profile. 168 190 IPR001611 GO:0005515
Stsc211930g00006 639 MobiDBLite consensus disorder prediction 614 630 - -
Stsc211930g00006 639 Gene3D Ribonuclease Inhibitor 188 232 IPR032675 -
Stsc211930g00006 639 FunFam pollen receptor-like kinase 1 315 419 - -
Stsc211930g00006 639 Gene3D Transferase(Phosphotransferase) domain 1 420 637 - -
Stsc211930g00006 639 Pfam Leucine Rich Repeat 191 210 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211930g00006 Stsc-Chr211930 35257 37564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211930g00006 3 637 Receptor kinase-like Gene Family AT5G58300 66.460 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc211930g00006 Pkinase 5.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211930g00006 - - gmx:100796171 971.074