Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211930g00001 ATGTCCGTACAATCCACCCTGAAGCTTCAGAATATGGCAACAGGAAGCTCAAGCTTCGATTTTGAAGGTGACCCACCATGCAAAAACGCAAAAAAGCTTCCACCCAAGAAGCTCCTCCGAATCATACTCACCGATCCCGACGCCACCGATTCTGAATCCTCCAACGATGAAGCTGAACACCAAAACCCATCTCCGAGGGTAAAAAGGGAAATTATCACTCACATAATCACCCCTCGCCTTCACTCTCCGCATTCTTCTTCCCCAACCGCTTCTTCTTCATCACCTTCTTCTCCTTCAATCGGTTCGGGTCAAAACCAGGTCGACCCGAACCGGTTCAAGAGGAAAATTAAACGCTCTGTTTCTGGTTCTAGAAGGTTCCGTGGCGTTCGCCAGAGACCGTGGGGAAGGTGGACGGCGGAGATCCGAGATCCGACCCGAAGGAAACGGGTTTGGTTGGGCACTTTTGACTCCGCGGAGGAGGCCGCCGCCGTGTACGACGCCGCAGCGGTGAGGTTCAAGGGTCCTGGCGCGGCTATCAACTTCCCCCGTAGCGATTCCGAAGTTTCCGGCGAGAGTTTTGCGGCGGTTTCCGGTGGCAGAGAGGGTTTTGCCTCTCCGACTTCGGTTCTTGCTTACGGTGACGGCTTTGTTGGGGGTTGTGAGACGACGCCGTTTGAGGTTCTCCGTTACGGCGATGTGGATGCTTTCGGTTTTGATATTGACGTGCCGTTAAATTTAACGGACGTTAACTCAGTGCTGACTCAGCGGTTCGGGAAGGAAGAGTTCAGCGAGTTTGACCCGGAAGATTTCCTGACGTGGCCTGAATAG 828 0.535 MSVQSTLKLQNMATGSSSFDFEGDPPCKNAKKLPPKKLLRIILTDPDATDSESSNDEAEHQNPSPRVKREIITHIITPRLHSPHSSSPTASSSSPSSPSIGSGQNQVDPNRFKRKIKRSVSGSRRFRGVRQRPWGRWTAEIRDPTRRKRVWLGTFDSAEEAAAVYDAAAVRFKGPGAAINFPRSDSEVSGESFAAVSGGREGFASPTSVLAYGDGFVGGCETTPFEVLRYGDVDAFGFDIDVPLNLTDVNSVLTQRFGKEEFSEFDPEDFLTWPE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211930g00001 275 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Stsc211930g00001 275 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Stsc211930g00001 275 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Stsc211930g00001 275 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Stsc211930g00001 275 MobiDBLite consensus disorder prediction 79 109 - -
Stsc211930g00001 275 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Stsc211930g00001 275 MobiDBLite consensus disorder prediction 1 127 - -
Stsc211930g00001 275 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Stsc211930g00001 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 187 - -
Stsc211930g00001 275 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Stsc211930g00001 275 PIRSF PTI6 3 275 IPR017392 GO:0003700
Stsc211930g00001 275 MobiDBLite consensus disorder prediction 1 18 - -
Stsc211930g00001 275 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Stsc211930g00001 275 MobiDBLite consensus disorder prediction 53 75 - -
Stsc211930g00001 275 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211930g00001 Stsc-Chr211930 4219 5882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211930g00001 37 212 AP2-EREBP Transcription Factor Family AT4G27950 42.553 1.82e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc211930g00001 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211930g00001 K13434 - gmx:102660028 244.973