Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211928g00004 ATGAGCAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAATTTATAATTTGGATGATTCTGATGATGATGCTGATTTTTTACCTAGAAAACCTGGGACTACTCAGGAAACGTTTGAGAGGATAGACAGAAGTGATGCGAAAGAAAATTTATGTCAAGCCTGTGGAGAAAGTGACAATCTTCTGAACTGTGATACGTGCACTTATTCTTACCATCCTAGGTGTTTAGTTCCACCAATTAAAGGTGCCATTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTCAATGATATTGATAAAATATTAGATTGTGAGATGCGCCCTACTGTAGCTGCTGATGATGATGCCACAAATTTAGGGTCAAAGCAAATATTTGTGAAACAATACCTGGTTAAGTGGAAGGGACTATCGTATTTGCACTGTACCTGGTAA 444 0.4032 MSSLVERLRVRSDRKPIYNLDDSDDDADFLPRKPGTTQETFERIDRSDAKENLCQACGESDNLLNCDTCTYSYHPRCLVPPIKGAIPDNWRCPECVSPLNDIDKILDCEMRPTVAADDDATNLGSKQIFVKQYLVKWKGLSYLHCTW 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211928g00004 147 SMART PHD_3 53 96 IPR001965 -
Stsc211928g00004 147 ProSiteProfiles Chromo and chromo shadow domain profile. 100 147 IPR000953 -
Stsc211928g00004 147 Gene3D - 98 147 - -
Stsc211928g00004 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 97 IPR013083 -
Stsc211928g00004 147 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Stsc211928g00004 147 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Stsc211928g00004 147 CDD CD1_tandem 98 147 - -
Stsc211928g00004 147 Pfam PHD-finger 54 96 IPR019787 -
Stsc211928g00004 147 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 147 IPR023780 -
Stsc211928g00004 147 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Stsc211928g00004 147 SUPERFAMILY Chromo domain-like 66 147 IPR016197 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211928g00004 51 96 C2H2 Transcription Factor Family AT3G01460 50.000 9.29e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc211928g00004 Chromo 3.7e-08 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211928g00004 K11643 - gmx:100790230 269.626