Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211928g00003 ATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGACCCGAGTGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGTTGATGATGAGAAGGAATATCTTGTGAAATGGAAAGAGCTTCCATACGATGAATGCTATTGGGAGTTTGAGACAGATATTTCAGCATTTCAACCAGAAATAGAAAGATTCAATAAATTCCGTTCTAAATCCAGCAAACTTGCTTCCATGAAGCAAAAAAGCAGTGTTAAGGATGATGTTGAATTGAAGAAACAGCAGAAGGAATTTCAACAGTATGAACATAGCCCTGAGTTTCTTTCAGGCGGTACACTACATCCATATCAGCTAGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTGGCTGATGAAATGGGTCTAGGAAAAACCATACAAAGTATTGCATTCTTAGCATCCCTTTTTGAAGAGGGTGTTTATCCACATCTGGTGGTTGCTCCACTTTCAACATTGCGGAACTGGGAACGTGAATTTGCTACATGGGCACCTCACATGAATGTTGTACGTATCATGGGCTTGAATAGTATTGTTGCTGTTTGA 603 0.4063 MASVNTSDEDFVAIRPEWTTVDRILACRGVDDEKEYLVKWKELPYDECYWEFETDISAFQPEIERFNKFRSKSSKLASMKQKSSVKDDVELKKQQKEFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVYPHLVVAPLSTLRNWEREFATWAPHMNVVRIMGLNSIVAV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211928g00003 200 CDD CD2_tandem 17 68 - -
Stsc211928g00003 200 Gene3D - 78 197 IPR038718 -
Stsc211928g00003 200 ProSiteProfiles Chromo and chromo shadow domain profile. 19 68 IPR000953 -
Stsc211928g00003 200 SUPERFAMILY Chromo domain-like 7 69 IPR016197 -
Stsc211928g00003 200 CDD DEXHc_Snf 113 196 - -
Stsc211928g00003 200 Gene3D - 6 69 - -
Stsc211928g00003 200 Pfam SNF2-related domain 132 193 IPR000330 GO:0005524|GO:0140658
Stsc211928g00003 200 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 7 190 - -
Stsc211928g00003 200 Pfam Chromo (CHRromatin Organisation MOdifier) domain 20 68 IPR023780 -
Stsc211928g00003 200 SMART chromo_7 17 71 IPR000953 -
Stsc211928g00003 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 194 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211928g00003 Stsc-Chr211928 30262 31489 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc211928g00003 SNF2_N 6.2e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211928g00003 K11643 - gmx:100804203 362.844