Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211928g00002 ATGACCATGGAGAATGGTGTTGATGATGGCAGTGATCAGTTCCCTAAAGGAATGCGTGTTCTTGCAGTTGATGATGACCCTACTTGCCTGATGGTTCTTGAAACACTTCTCAGAAGATGTCAATATCATGTTACCACAACAAGCCAAGCAATAAAGGCATTGAAGCTGCTGAGAGAAAACAAGTTTGACCTTGTAATAAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTGGGACTTGAGATGGACCTACCTGTTATAATGTTGTCTGCAAATGGTGATACAAAGCTTGTTATGAAGGGGATTTCTCATGGAGCTTGTGATTATCTGCTAAAACCTGTGAGAATTGAAGAGCTAAAGAACATTTGGCAGCATGTGATTAGGAGGAAGAAGTTTGATTCAAACAAAACCAGGAACTCCGACAAGCCTAATTCGGAGGCCGGCAATGTGCTTGGGTCAGCAGGAGCAGGAAATTCAGAGCAAAATGGGAAGCTGAATAAGAAAAGGAAGGATCAGGATGATGAAGAAGATGAGGAGCAAGATAATGGCCATGACAATGAGGATCCTTCGGCCCAGAAGAAGCCTCGAGTTGTTTGGTCTGTGGAGCTTCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGAATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTGACAAGGGAGAATGTGGCGAGCCATCTCCAGAAATATAGGCTTTACCTGAAACGAATAAGCTGCGTGGCGAACCAGCAGGCGAATATGGTGGCGGCCCTAGGAAGCGCGGATCCATCCTACTTGAGAATGGGCTCTATGAGTGGGGTTGGACATTTGCAAGCATTGAGTAGCTCAGGACAATTCCCTAACAATGCTTTCAGGTCTTTTCCGCCGACTGGGATGGTTAGTAGATTGAACACTCCTACTGGATTGAATGTGCATGGATTCCCTTCTTCCGGAGCATTTCAGTTGGGGCAATCACAGAATTTAAGCAACTCAAGTGTTGAACAGCTCAAGTACCTGTCATCCATTGTTCCTGTTAATCAGAATAGTGTTCATGGAATGCAGGTGCCTATGGGGCTTGATCCGTTGCAAAACAATAAGGGTGTTAATCCTGTTCAGAACCTGACCACTGGTATTGATGCCAAAACAAATTTTCCTGTCTCTAATAAGCTCCCGGATCCACATTCTAGAGTAGCATCTGGCGCGCATCCCCCACTTCTTGGTAACTCAAACAATGCCTTGATGTTGGAAGCAAGACCACAAGACACTCGAAGGGTTATAGAATACGAAGACTTAGCTTCTTCGGTACCCTCCCAACATTCAGAACTCCCATTCTCTTTGCTGGATCAAGGTAGATATAGTGATAACTGGTCTAATGCTGTGCAATCATCTCGGATCCAGACTGGTTCTTACCCTTCAAGTGAAAGTTTTAGACAGTCAGCGATACCTGCTACGGATAACATGGCTTCTTTACCCTTACAAGAAGGGAATCTGAGCGTTTCTTCATCCATCTCTTTGCTGCCTAACCAATCCTACAATTCATTGTTAGATACACACTCCCAACCTGTGATTTTAGCTAATAGAACTGGTCATGTGAGCAATAATGATGTGCCGTTTCAAGGCTGGGATGATCACAATCAAGATGCTAGCTACCCTTCAAATGCTGTTTGTAGCACAGTAAACACTGTGACTCCGGTTTCGAGTGCTGTTTGTCACACACCAATAAACTCAGCCTTACACAGGAACTTGGACTTTAACTATGGTGATAGCTTGCAAATGAAGCGCGATGCTGTGGCGAAGTTAGCAGCTAAAGAGACCTCGTTGAAACCACATCTGGGGAATATCATGAACCAGCAGAAGTCTCAACAGAGTCACTTCTCCAATAATGTTGGTTCCCTGGAAGACTTGGTCAGTTCAATGATGAAACAGGTAAAAACATCTATGCATTATAGTGAAGATTGA 1998 0.4389 MTMENGVDDGSDQFPKGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAIKALKLLRENKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSNKTRNSDKPNSEAGNVLGSAGAGNSEQNGKLNKKRKDQDDEEDEEQDNGHDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADPSYLRMGSMSGVGHLQALSSSGQFPNNAFRSFPPTGMVSRLNTPTGLNVHGFPSSGAFQLGQSQNLSNSSVEQLKYLSSIVPVNQNSVHGMQVPMGLDPLQNNKGVNPVQNLTTGIDAKTNFPVSNKLPDPHSRVASGAHPPLLGNSNNALMLEARPQDTRRVIEYEDLASSVPSQHSELPFSLLDQGRYSDNWSNAVQSSRIQTGSYPSSESFRQSAIPATDNMASLPLQEGNLSVSSSISLLPNQSYNSLLDTHSQPVILANRTGHVSNNDVPFQGWDDHNQDASYPSNAVCSTVNTVTPVSSAVCHTPINSALHRNLDFNYGDSLQMKRDAVAKLAAKETSLKPHLGNIMNQQKSQQSHFSNNVGSLEDLVSSMMKQVKTSMHYSED 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211928g00002 665 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Stsc211928g00002 665 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 255 IPR017930 -
Stsc211928g00002 665 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Stsc211928g00002 665 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 347 IPR045279 GO:0009736
Stsc211928g00002 665 FunFam Two-component response regulator 195 258 - -
Stsc211928g00002 665 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Stsc211928g00002 665 MobiDBLite consensus disorder prediction 146 167 - -
Stsc211928g00002 665 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Stsc211928g00002 665 CDD REC_typeB_ARR-like 20 132 - -
Stsc211928g00002 665 Gene3D - 195 258 - -
Stsc211928g00002 665 MobiDBLite consensus disorder prediction 138 199 - -
Stsc211928g00002 665 PIRSF RR_ARR_type-B 1 665 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc211928g00002 665 SMART REC_2 18 128 IPR001789 GO:0000160
Stsc211928g00002 665 Gene3D - 18 154 - -
Stsc211928g00002 665 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Stsc211928g00002 665 SUPERFAMILY CheY-like 16 138 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211928g00002 Stsc-Chr211928 15496 19204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211928g00002 1 655 Response Regulator Gene Family AT2G25180 43.815 8.94e-141 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc211928g00002 Response_reg 4.2e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211928g00002 K14491 - gmx:100809002 912.138