Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211923g00003 ATGGCTCCTGCATTAGATTCCGATGCAAAGCTACTTGACCACCTCAAGCTAGCACCACAACTACTTGAGAAACAAGAACATCAAGAAGAAGACGATGGCTTCTTGATTTCTCAAATGGCATGGTCAATTGTGGTTCCAATGGCTTTGAGGACCACAATAGAGCTTGGTGTATTTGACATCATAGCCAAAGCTGGAGAAGATGCAAAGCTCTCAGCAAAAGATATTGTAGATCAAATTGGAACCAACAACCCTGAAGCAGCAACAATGCTGGATCGTGTTCTTAGGCTTCTTGCAAGAGCTATTCTTGAAGGAGGTATACCATTCAATAGGGCTCATGGCATGCATGTGTTTGAGTACGCAAAGATTGATGATAGGTTCAACAATGTTTTCAACAAAGCAATGCACAATTCCTCCACTATATTAATGAAGAGAATTCTTGATGTCTACAAAGGCTTTGATAACATCAATAAACTAGTTGATGTTGGTGGTGGTGTTGGGGCAAATATAAAATTAATCACTTCCAAACACGCTCATATCCATGGCATCAATTTTGATTTGCCTCATGTCATAGATTCTGCCTCAGCCTATGATGGTGTAGAGCATGTGGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTTTCATGAAGAGAATACTTCATGATTGGGGCGACGAAGAATGCTTGAAGATATTGAGAAATTGCTTCAAGGCTATTCCCAATGATGGGAAGGTGATTGTGGTGGAAACAATTCTTCCCATTGTTCCTGAGGCAACATCTTTTGCCAAGAATGCTTTTAAATATGATATTGTCATGATGACTCAAATGCCTGGAGGGATTGAAAGAACCAAACAAGATTTCATGGATTTAGCAAATGGATCTGGATTTAGTGGCATCAGATATGTTTGTTGTGACTCTAGCTTTTGGGTCATGGAGTTCTACAAGTAG 954 0.4015 MAPALDSDAKLLDHLKLAPQLLEKQEHQEEDDGFLISQMAWSIVVPMALRTTIELGVFDIIAKAGEDAKLSAKDIVDQIGTNNPEAATMLDRVLRLLARAILEGGIPFNRAHGMHVFEYAKIDDRFNNVFNKAMHNSSTILMKRILDVYKGFDNINKLVDVGGGVGANIKLITSKHAHIHGINFDLPHVIDSASAYDGVEHVGGDMFESVPNGDAIFMKRILHDWGDEECLKILRNCFKAIPNDGKVIVVETILPIVPEATSFAKNAFKYDIVMMTQMPGGIERTKQDFMDLANGSGFSGIRYVCCDSSFWVMEFYK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211923g00003 317 Pfam O-methyltransferase domain 97 299 IPR001077 GO:0008171
Stsc211923g00003 317 SUPERFAMILY "Winged helix" DNA-binding domain 28 99 IPR036390 -
Stsc211923g00003 317 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 94 316 IPR029063 -
Stsc211923g00003 317 Pfam Dimerisation domain 47 98 IPR012967 GO:0046983
Stsc211923g00003 317 PIRSF O-mtase 14 103 IPR016461 GO:0008168
Stsc211923g00003 317 PIRSF O-mtase 97 317 IPR016461 GO:0008168
Stsc211923g00003 317 PANTHER O-METHYLTRANSFERASE 39 99 IPR016461 GO:0008168
Stsc211923g00003 317 FunFam Caffeic acid O-methyltransferase 81 317 - -
Stsc211923g00003 317 Gene3D - 16 103 IPR036388 -
Stsc211923g00003 317 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 317 IPR016461 GO:0008168
Stsc211923g00003 317 Gene3D Vaccinia Virus protein VP39 116 317 IPR029063 -
Stsc211923g00003 317 FunFam Caffeic acid 3-O-methyltransferase 16 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211923g00003 Stsc-Chr211923 29721 32449 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211923g00003 38 305 Monolignol Biosynthesis Gene Families AT5G54160 43.385 1.48e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211923g00003 K13066 - gmx:100789402 359.377