Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211923g00001 ATGGCTCTTGCATCAAATGATTCCGATGTAAAACTTGAGAAACAAGAAGATGATGCCTTTTTGTTTTCACAAATGGCATGTTCAATTGTGGTTCCAATGGCTTTGAGGACCACGATAGAGCTTGGTGTATTTGACATCATAGCCAAAGCTGGAGAAGGTGCAAAGCTCTCAGCAAAAGATATTGTGGATCAAATTGGAACCAACAACCCTGAAGCTGCAACAATGTTGGATCGT 234 0.4103 MALASNDSDVKLEKQEDDAFLFSQMACSIVVPMALRTTIELGVFDIIAKAGEGAKLSAKDIVDQIGTNNPEAATMLDR 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211923g00001 78 Gene3D - 2 78 IPR036388 -
Stsc211923g00001 78 Pfam Dimerisation domain 33 78 IPR012967 GO:0046983
Stsc211923g00001 78 SUPERFAMILY "Winged helix" DNA-binding domain 16 78 IPR036390 -
Stsc211923g00001 78 FunFam Caffeic acid 3-O-methyltransferase 3 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211923g00001 Stsc-Chr211923 3358 3591 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211923g00001 16 78 Monolignol Biosynthesis Gene Families AT5G54160 43.750 7.40e-11 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211923g00001 K13066 - ahf:112764389 134.806