Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211922g00001 ATGGGCCTTTCCCTCAATATTGACATGGCTTCTGCTGCATTCATTGAGCCTCTTCCAGTAGTAGAATTTGTTGGCCAACTATTAGGCAAAGATGTTCTTTCAAGGCCACTTTCGGATGCTGATCGCATCAAGATTAAGAAAGCCCTCAGAGGAGTTAAGGTTGAAGTAACACACAGAGGAAATGTAAGAAGGAAATATCGCGTTTCAGGATTGACTTCTCAACCAACCAGAGAACTTGTGTTCCCTGTTGATGAGAACTCAACTATGAAGTCGGTGGTTGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATACACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCAAACTACTTACCTATGGAGGCCTGCAAAATTGTTGAGGGGCAAAGGTATACAAAAAGATTGAATGAGAAGCAAATTACTGCACTCCTCAAAGTTACCTGCCAGAGACCGCGTGATCGCGAAAATGACATCTTACGGACGGTGCAACATAATGCTTACAATGAAGATCCTTATGCAAAGGAGTTTGGCCTTAAAATCAGCGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCAGCACCTTGGCTTAAATACCATGAAAGTGGGAAAGAAAAGAACTGTTTACCCCAAGTTGGTCAGTGGAACATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATTAATTTTTCGCGGAGTGTGCAAGATAGTGTTGCTCGGACGTTTTGTCATGAGCTTGCTCAAATGTGTCAAGTGTCTGGCATGGAATTCAATCCAGAGCCTGTCATCCCCATCTACAATGCCAAGCCAGAGCAGGTTGAGAAAGCTTTAAAGCATGTTTATCATGTGTCGACGAACAAAACAAAAGGAAAAGAGTTGGAGCTCTTGTTAGCAATATTGCCTGACAACAATGGATCTCTATATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTCAAGATCACCAAACAGTACTTGGCAAATGTATCTCTAAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTAGATGCTGTAAGCTGCAGAATACCGTTGGTTAGCGACATACCAACCATAATATTCGGAGCAGATGTTACTCACCCTGAAAATGGAGAAGACTCTAGCCCTTCAATAGCAGCTGTAGTAGCATCCCAGGACTGGCCTGAAGTCACAAAATATGCTGGTTTAGTTTGTGCTCAAGCTCATAGACAGGAGCTTATACAAGATTTATACAAAACTTGGCATGATCCTGTTCGTGGCACAGTCAGCGGTGGCATGATCCGAGATTTGTTGGTTTCCTTTAGAAAGGCTACAGGGCAGAAGCCACTAAGGATTATATTTTACAGAGATGGTGTAAGTGAAGGACAATTTTACCAAGTTCTCCTTTATGAATTAGATGCAATCCGGAAGGCATGTGCTTCCTTAGAACCGAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAAAGACACCATACCCGGTTATTCGCAAACAACCACCGTGACAGGAGCAGTACAGACAAGAGTGGGAATATAATGCCTGGGACTGTTGTTGATTCTAAAATATGCCATCCAACAGAATTTGATTTTTATCTATGCAGCCATGCTGGTATTCAGGGTACAAGTAGGCCAGCACATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAATCTTTGACAAACAATCTGTGTTACACATATGCAAGGTGTACACGCTCAGTATCAGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCATTTCGAGCCCGTTTCTATATGGAGCCAGATATGCAAGAGAATGACTCTACAGGTGGCGGCAACGGCGGCAACGGTGGTGGTCGTGGCGGGTCGAAGGGTACTCGAGCAGCCGGAGAGTGTGGTGTGAAGCCACTGCCAGCCTTGAAAGAGAATGTGAAGAGAGTAATGTTTTACTGCTGA 2037 0.4296 MGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNAYNEDPYAKEFGLKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCHELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNIMPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENDSTGGGNGGNGGGRGGSKGTRAAGECGVKPLPALKENVKRVMFYC 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211922g00001 678 Pfam Piwi domain 307 626 IPR003165 GO:0003676
Stsc211922g00001 678 ProSiteProfiles Piwi domain profile. 306 627 IPR003165 GO:0003676
Stsc211922g00001 678 FunFam Argonaute 10 196 369 - -
Stsc211922g00001 678 SUPERFAMILY PAZ domain 12 173 IPR036085 GO:0005515
Stsc211922g00001 678 CDD PAZ_argonaute_like 17 131 - -
Stsc211922g00001 678 Gene3D - 375 678 IPR036397 GO:0003676
Stsc211922g00001 678 FunFam Protein argonaute-2 11 137 - -
Stsc211922g00001 678 Pfam Argonaute linker 2 domain 158 204 IPR032472 -
Stsc211922g00001 678 ProSiteProfiles PAZ domain profile. 18 132 IPR003100 GO:0005515
Stsc211922g00001 678 CDD Piwi_ago-like 176 626 IPR045246 -
Stsc211922g00001 678 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 628 - -
Stsc211922g00001 678 Pfam Mid domain of argonaute 215 292 IPR032473 -
Stsc211922g00001 678 Pfam PAZ domain 44 148 IPR003100 GO:0005515
Stsc211922g00001 678 SMART PAZ_2_a_3 22 154 IPR003100 GO:0005515
Stsc211922g00001 678 MobiDBLite consensus disorder prediction 631 655 - -
Stsc211922g00001 678 SMART Piwi_a_2 306 627 IPR003165 GO:0003676
Stsc211922g00001 678 Gene3D - 196 369 - -
Stsc211922g00001 678 FunFam protein argonaute 10-like 375 678 - -
Stsc211922g00001 678 Gene3D paz domain 11 136 - -
Stsc211922g00001 678 SUPERFAMILY Ribonuclease H-like 298 628 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211922g00001 Stsc-Chr211922 29346 34134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211922g00001 1 678 Eukaryotic Initiation Factors Gene Family AT5G43810 89.691 0.0 1296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211922g00001 K11593 - gmx:100816999 1305.81