Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211920g00006 ATGAGCACCTCCTCCGGCGGAGACACGTCGGCGTCGAATAAGGAGAATGAACGGGTGAGCAAGACGTCACTGATTCACTGGCACTCACACCATAACGACGCCGCAGCGGTTCGGAAGCTTCTAGAAGAGGATCCCTCCCTCGTGCAGGCACGTGACTATGACAACCGCACGCCCCTCCACGTGGCCTCCCTCCACGGCTGGGCCGACGTTGCCAGCTGCCTCATCGAGTTCGGCGCTGACGTCAACGCCCAAGACCGTTGGAAAAACACCGGCCAAAATGGAAGTCATTTAGAACCTAGGTCTGTTCCACCCCCATTGCCTAACAAGTGTGATTGGGAAGTTGACCCTACTGAGCTGGACTTCTCAAATTCAATTTGTATTGGAAAGGGATCTTTTGGAGAGATTTTAAGAGCTCATTGGCGTGGAACACCTGTTGCTGTCAAACGTATTCTTCCAGCTCTTTCAGATGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTTAATTTGCTAGTGAAACTTCGACACCCAAATGTTGTTCAATTTCTTGGAGCTGTTACTGATAAAAAGCCTCTAATGTTGATTACTGAGTATCTAAGAGGGGGTGATCTTCATAGGTACCTCAAGGTTAAAAGTTCAGTTAGTACTTCGACAGCAATCAACTTTGCCATGGATATTGCCAGAGGGATGGCCTATCTTCACAGTGAACCAAATGTTATAATTCATCGAGATCTCAAGCCAAGGAATGTTCTTTTGGTCAATTCTAGTGCTGACCATTTAAAAGTAGGAGATTTTGGACTTAGCAAGCTTATTAAGGTCAAAAGTTCTCACGATGTGTACAAGATGACTGGTGAAACTGGAAGTTACCGCTATATGGCTCCTGAAGTTTTCAAACACCGGAGATATGACAAGAAGGTTGATGTGTTCTCCTTTGCTATGATCTTGTATGAGATACTTGAAGGTGAACCACCTTTTACAAATTTAGAACCTTATGAGGGAGCCAAGCATGTGGCTGAGGGACACAGACCAATTATTCGAGCAAAAGGTTATGGTCCAGAACTGCGAGAGTTAATAGAGCTTTGTTGGGCTGGTGACACGAATCAAAGACCTTCCTTCATAGATATCCTTAAACGGCTTGAGAAGATCAAGGAAAAACCTTCAGAGCATCATTGGCACTTGTTCTCTTCATAA 1191 0.4551 MSTSSGGDTSASNKENERVSKTSLIHWHSHHNDAAAVRKLLEEDPSLVQARDYDNRTPLHVASLHGWADVASCLIEFGADVNAQDRWKNTGQNGSHLEPRSVPPPLPNKCDWEVDPTELDFSNSICIGKGSFGEILRAHWRGTPVAVKRILPALSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDKKPLMLITEYLRGGDLHRYLKVKSSVSTSTAINFAMDIARGMAYLHSEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLIKVKSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMILYEILEGEPPFTNLEPYEGAKHVAEGHRPIIRAKGYGPELRELIELCWAGDTNQRPSFIDILKRLEKIKEKPSEHHWHLFSS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211920g00006 396 SMART ANK_2a 20 49 IPR002110 GO:0005515
Stsc211920g00006 396 SMART ANK_2a 54 83 IPR002110 GO:0005515
Stsc211920g00006 396 Gene3D Phosphorylase Kinase; domain 1 113 200 - -
Stsc211920g00006 396 Pfam Protein tyrosine and serine/threonine kinase 127 379 IPR001245 GO:0004672|GO:0006468
Stsc211920g00006 396 ProSiteProfiles Protein kinase domain profile. 121 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211920g00006 396 FunFam serine/threonine-protein kinase STY46-like 114 200 - -
Stsc211920g00006 396 MobiDBLite consensus disorder prediction 86 107 - -
Stsc211920g00006 396 PRINTS Tyrosine kinase catalytic domain signature 234 252 IPR001245 GO:0004672|GO:0006468
Stsc211920g00006 396 PRINTS Tyrosine kinase catalytic domain signature 196 209 IPR001245 GO:0004672|GO:0006468
Stsc211920g00006 396 PRINTS Tyrosine kinase catalytic domain signature 350 372 IPR001245 GO:0004672|GO:0006468
Stsc211920g00006 396 SUPERFAMILY Protein kinase-like (PK-like) 120 387 IPR011009 -
Stsc211920g00006 396 SMART serkin_6 121 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211920g00006 396 ProSitePatterns Protein kinases ATP-binding region signature. 127 148 IPR017441 GO:0005524
Stsc211920g00006 396 Gene3D - 3 93 IPR036770 -
Stsc211920g00006 396 Pfam Ankyrin repeats (3 copies) 21 85 IPR002110 GO:0005515
Stsc211920g00006 396 SUPERFAMILY Ankyrin repeat 20 90 IPR036770 -
Stsc211920g00006 396 Gene3D Transferase(Phosphotransferase) domain 1 201 393 - -
Stsc211920g00006 396 ProSiteProfiles Ankyrin repeat region circular profile. 54 86 - -
Stsc211920g00006 396 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 66 383 - -
Stsc211920g00006 396 CDD STKc_MAP3K-like 127 379 - -
Stsc211920g00006 396 ProSiteProfiles Ankyrin repeat profile. 54 86 IPR002110 GO:0005515
Stsc211920g00006 396 PIRSF ILK 1 93 - -
Stsc211920g00006 396 PIRSF ILK 90 396 - -
Stsc211920g00006 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Stsc211920g00006 396 FunFam Integrin-linked protein kinase family 200 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211920g00006 Stsc-Chr211920 29215 35368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211920g00006 13 396 MAP Kinase Kinase Kinase AT1G14000 76.829 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Stsc211920g00006 PK_Tyr_Ser-Thr 3.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211920g00006 - - gmx:100793237 677.937