Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211919g00002 ATGGGCAATTGTTGCTCTCAAGGCAACGCTGTAGATGCCCCGGAGGCCGACGCCGCGGCGGTCACCGCAAACAAGGGAGAGTCGAACAACCAACAAGAGAATAATGGAAGTAGCAATAACAACAAAAATAAAAGCCCATCTGAAAGCCCTCCATCAACCAAACCTCCACCTACATCAAAGCCACCACCCTCAACCACATCTCCTCCATCAACGGCAAAGCCTTCCAAGCCAGGCCCCATTGGGCCTGTCCTTGGAAGGCCAATGGAGGATATCAAAGCCACGTATAGTTTGGGTAAGGAATTAGGTAGAGGAATGTTTGGGGTAACATATTTATGCACCCACAAGGCCACAGGGAAACAATTTGCATGCAAAACAATTGCTAAGAGGAAACTAGTAAATAAGGAGGATATTGAAGATGTTAGGAGGGAGGTGCAAATCTTATACCATCTCTCAGGGCAACCTAACATTGTAGAGCTTAAAGGTGCTTATGAGGACAAACAATCTGTTCATTTAGTTATGGAATTGTGTGTGGGTGGTGAGCTCTTTGATCGTATTATTGCTAAGGGGCATTACACCGAGCGTGCTGCTGCTACCTTATTAAGAACCATTATGGAGATTGTCCATACCTTCCACTCTCTTGGTGTCATTCATAGAGATCTCAAACCTGAGAATTTTCTCTTGTTGAGCAAGGACGAAGATGCCCCCCTTAAAGCCACAGATTTTGGTTTATCCGTTTTTTACAAGCAAGGGGATGTTTTCAAAGACATTGTTGGTAGTGCTTACTATATTGCACCTGAAGTCTTGAAAAGGAAATATGGCCCAGAAGTTGACATATGGAGTGTTGGTGTTATGCTATACATTCTTTTATGCGGGGTTCCTCCATTCTGGGCAGAATCTGAACATGGCATATTCAATGCCATCCTTAGAGGTCACATAGACTTTTCAAGCGACCCATGGCCTTCAATTTCACCATCAGCAAAAGATCTTGTACGGAAAATGTTGAATTCAGATCCTAAACAAAGGCTTACAGCTTACGAAGTTTTGAATCATCCTTGGGTTAAGGAAGACGGAGAAGCACCAGATAAGCCTATTGATAACGCTGTGCTAAATAGGCTCAAACAATTCAAAGCAATGAATGAATTCAAGAAAGTTGCTTTAAGGGTTATTGCAGGGTGTTTATCAGAAGAAGAAATCATGGGGTTAAAGGAAATGTTTAAGGGGATGGACACTGATAATAGTGGAACCATTACAATTGAAGAACTTAAGCAAGGGCTTGCAAAGCAGGGGACAAAGCTATCAGAGCAAGAAGTTCAACAATTACTTGAAGCAGCAGATGCTGATGGAAATGGTACCATAGACTATGATGAATTCATTACAGCAACAGTTCATATGAATAGAATGAATAGAGAAGAACATCTTTATAAAGCCTTCCAATACTTTGATAAAGATAACAGCGGGTTTATCACCACTGAAGAATTAGAGCAAGCTCTCCATGAGTATAACATCCACGATGGGAGAGACATCAATGAAATTGTTCAAGAAGTTGATGTAGATAATGATGGTCGTATTAACTATGAAGAGTTTGTGGCGATGATGAGAAAAGGACAAGTTGATGCACATACCAAAAAGAGGCGTGAATCACTCAATTTGCATAAGTAG 1659 0.4165 MGNCCSQGNAVDAPEADAAAVTANKGESNNQQENNGSSNNNKNKSPSESPPSTKPPPTSKPPPSTTSPPSTAKPSKPGPIGPVLGRPMEDIKATYSLGKELGRGMFGVTYLCTHKATGKQFACKTIAKRKLVNKEDIEDVRREVQILYHLSGQPNIVELKGAYEDKQSVHLVMELCVGGELFDRIIAKGHYTERAAATLLRTIMEIVHTFHSLGVIHRDLKPENFLLLSKDEDAPLKATDFGLSVFYKQGDVFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFSSDPWPSISPSAKDLVRKMLNSDPKQRLTAYEVLNHPWVKEDGEAPDKPIDNAVLNRLKQFKAMNEFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLSEQEVQQLLEAADADGNGTIDYDEFITATVHMNRMNREEHLYKAFQYFDKDNSGFITTEELEQALHEYNIHDGRDINEIVQEVDVDNDGRINYEEFVAMMRKGQVDAHTKKRRESLNLHK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211919g00002 552 FunFam Calcium-dependent protein kinase 1 361 536 - -
Stsc211919g00002 552 CDD STKc_CAMK 95 352 - -
Stsc211919g00002 552 SMART efh_1 507 535 IPR002048 GO:0005509
Stsc211919g00002 552 SMART efh_1 400 428 IPR002048 GO:0005509
Stsc211919g00002 552 SMART efh_1 472 500 IPR002048 GO:0005509
Stsc211919g00002 552 SMART efh_1 436 464 IPR002048 GO:0005509
Stsc211919g00002 552 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Stsc211919g00002 552 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Stsc211919g00002 552 ProSiteProfiles Protein kinase domain profile. 95 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211919g00002 552 ProSitePatterns Protein kinases ATP-binding region signature. 101 128 IPR017441 GO:0005524
Stsc211919g00002 552 Pfam Protein kinase domain 95 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211919g00002 552 Pfam EF-hand domain pair 470 533 IPR002048 GO:0005509
Stsc211919g00002 552 Pfam EF-hand domain pair 401 461 IPR002048 GO:0005509
Stsc211919g00002 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Stsc211919g00002 552 SUPERFAMILY EF-hand 393 533 IPR011992 -
Stsc211919g00002 552 MobiDBLite consensus disorder prediction 49 76 - -
Stsc211919g00002 552 FunFam calcium-dependent protein kinase 1 181 360 - -
Stsc211919g00002 552 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Stsc211919g00002 552 MobiDBLite consensus disorder prediction 23 48 - -
Stsc211919g00002 552 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Stsc211919g00002 552 ProSitePatterns EF-hand calcium-binding domain. 516 528 IPR018247 -
Stsc211919g00002 552 Gene3D Phosphorylase Kinase; domain 1 97 180 - -
Stsc211919g00002 552 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Stsc211919g00002 552 Gene3D - 361 541 - -
Stsc211919g00002 552 FunFam Calcium-dependent protein kinase 1 97 180 - -
Stsc211919g00002 552 MobiDBLite consensus disorder prediction 1 87 - -
Stsc211919g00002 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 89 528 - -
Stsc211919g00002 552 SUPERFAMILY Protein kinase-like (PK-like) 94 357 IPR011009 -
Stsc211919g00002 552 SMART serkin_6 95 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211919g00002 552 ProSiteProfiles EF-hand calcium-binding domain profile. 507 538 IPR002048 GO:0005509
Stsc211919g00002 552 Gene3D Transferase(Phosphotransferase) domain 1 181 360 - -
Stsc211919g00002 552 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211919g00002 Stsc-Chr211919 21368 25609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211919g00002 1 546 EF-hand Containing Proteins AT5G12180 77.473 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc211919g00002 Pkinase 4.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211919g00002 K13412 - gmx:100781355 884.789