Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211918g00005 ATGACTTCCGTACCTTCAAAAAGCTTATGGATTAGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTACATTACATATGAGGGTGATTCTGATGAGGGTTCTGGAGCACAAGAATTGGTGAAGGAAGAAAAAGCTTCATCTGGTGCCATGATCACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGAAGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTGTTAGGAAGGAAAGGTCTAGGGTTAGTCCCCAGTTAGGAATTTACAAGCGTGACTTTGTTTGTTACCGTTCGGGATTCGCCCCGGTGAAGAGGAAGCCTAATGGAGAGCACCATAGAGATAGGAAATCGGTTAGGTGCGGATGCGATGCGAAAATGTATCTGTCTAAGGAGGTTGTTGATGGGGTTTCCCAATGGTTTGTTGTGCAATTCAGTAACATCCATAATCATGAGCTTCTAGAAGATGACCAGGTTCGGCTTCTTCCGGCATATCGCAAGATTCACGAGGCTGATCAAGAGCGCATACTCTTGCTTTCTAAAGCAGGGTTTCCGATACACCGGATAGTGAAGATGCTGGAGCTGGAAAAGGGGATTCAAGGTGGGCAATTGCCTTTCTTGGAGAGGGATGTGAGGAACTTTGTTCAAAACCGCAAGAAGGTTGTTCAAGAGAACGAGGCATTGCTCAGTGAGAAGAGGGAAAATGATATATCAGAACTTCTTGAGGCCTGCAAAGCCATGAAAGAAGTTGATGGTGACTTTGTTTATGATTTCACAGTTGATGAGAATGATAAAGTTGAAAATGTAGCTTGGTCATATGGTGATTCTGTTAATGCAAATGCTATGTTTGGCGATGTAGTTTATTTCGACACGACATATCGATCCATCACTTATGGATTGCTTTTTGGAGTGTGGTTTGGTATTGATAGCTGTGGCAGAACCATGTTTTTCGGTTCTGTTTTGTTGCAGGATGAAACTCCTCAATCCTTCTCATGGGCATTGCAGACTTTTCTCCGATTCATGAACGGAAGATGTCCACAAACAATTCTAACTGATCTTGATCCTGGGCTTAAAGATGCCATTAGAAGCGAATATCCAGGGACTAAACATGTCATTCCACCATGGAATATTCTATACAAGGTACCAAGTTGGTTTTCTCTTCCTGTTGGGCCGCGCTATGCAGAATTTAAATCCATGTTTGATGCATTAATTCAAATTGAGAATACAGAGGAGTTTGAACTGCAATGGAGAGACATGATTTCTGTGTTTGGATTTGGTTCAGATAACCACATGGATTTACTGTATTCTGTTCGAGCATCCTGGGCACAATCCTATGTGAGAGGTTACTTTCTAGCTCGAATGGCTACAATAACTTACTCGAAATCAATAGATACTTTTCTAAAAGGGATCTTTGCTGCCCAAACATGTTTGCGCAGCTTTTTCGAGCAGGTTGGAATTTCTGCCAACATTCAACATCAAGCGAATCAGGAGACTCACTATATGCATCTCAAAACTTGCATACCCGTTGAAGAGCATGCGCGGAGTATCCTCACGCCTTTTGCTTTCAATGCTTTGCAGCAAGAGTTATTGCTTGCCATGCAATATGCTGCATCTGAGATGGCCAATGGATCATATATCGTGCGGCACTTCAAGAGTATGGATGGAGAACGGCTCGTAATATGGTTGGCCGAAGAGGAACAAATTCACTGCTCTTGCAAGGAATTTGAATCCTCTGGGATATTGTGCAGACATGCTCTTCGCGTGTTCATCATAAAGAATTACTTTCAGCTCCCTGACAAATACTATTTAAGCAGATGGAGAAGGGAATGTTCTCTACTCATTGATGATGATCACAATAATCAAAGTACTGATGGGGAGTGGTTTCAAGAGTATCAGTCCCTAGCTGAAACTTTGTTTTCGGAATCCTCCATTACAAAGGAACGATCTGACTATGCTCGAAGTCAACTGACAAAAGAACTTACCAGGATTCTCGATGAGGTCAGAAATCTGCCGGACACCGATGGAGTCCTAATGAACATGGCTGTATCGCCGAACGGTTAG 2076 0.4268 MTSVPSKSLWIRRQQCPCGDWKCYITYEGDSDEGSGAQELVKEEKASSGAMITPYVGMVFKSDDEAFEYYGNFARKNGFSVRKERSRVSPQLGIYKRDFVCYRSGFAPVKRKPNGEHHRDRKSVRCGCDAKMYLSKEVVDGVSQWFVVQFSNIHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLSEKRENDISELLEACKAMKEVDGDFVYDFTVDENDKVENVAWSYGDSVNANAMFGDVVYFDTTYRSITYGLLFGVWFGIDSCGRTMFFGSVLLQDETPQSFSWALQTFLRFMNGRCPQTILTDLDPGLKDAIRSEYPGTKHVIPPWNILYKVPSWFSLPVGPRYAEFKSMFDALIQIENTEEFELQWRDMISVFGFGSDNHMDLLYSVRASWAQSYVRGYFLARMATITYSKSIDTFLKGIFAAQTCLRSFFEQVGISANIQHQANQETHYMHLKTCIPVEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKSMDGERLVIWLAEEEQIHCSCKEFESSGILCRHALRVFIIKNYFQLPDKYYLSRWRRECSLLIDDDHNNQSTDGEWFQEYQSLAETLFSESSITKERSDYARSQLTKELTRILDEVRNLPDTDGVLMNMAVSPNG 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211918g00005 691 Pfam SWIM zinc finger 568 596 IPR007527 GO:0008270
Stsc211918g00005 691 Pfam MULE transposase domain 291 382 IPR018289 -
Stsc211918g00005 691 SMART 26again6 573 600 IPR006564 GO:0008270
Stsc211918g00005 691 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Stsc211918g00005 691 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 664 IPR031052 GO:0006355
Stsc211918g00005 691 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211918g00005 Stsc-Chr211918 25181 27783 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc211918g00005 MULE 6.8e-15 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211918g00005 - - gmx:100817107 1253.43