Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211918g00003 ATGTCTGGGGCGGATGCTCCTGTTTTTTTGACATGGGAGGAGAGGATTATATGCCATGAGCGTGGGAACCGTGTGATTCACTTCTACTTGAAGGATTCCTTGGGGAATTCGGTGCTTGCTGTTGTGGGGACTGAGAGGAGTGTGAGGCACATGATGTATGTTGTCCCTGACCATTTCTTGCAGGCTTATGGATCTGCACATTCCATCAATGCGTGTAAATGGCGGGCGAGGCGAGAGGTCGTGGAGTGGCTTACTTGTTTGGTTTCCAGGAACCATCCATCTGATTCAGCTGTTGAGGTGGATGATGCAGCAAAAGCTTTAGAATCTCTCAAGTTATTATCAACTGGAACCAGTGCTCATAAAAACACTTTACCGGATAAACTGATTTCTAGGAAATTGAGATTCCAGAGTTCAGATATTGAATGGTCGGGCATTGCTTGGTATTGTGCTAAACAGCTTAAGCACTACCCAGGGTTTCGTAGGAATGGGACAACCATTTATGTTCATTCGTTTGTATATATTATGGCTGAAGAAGAAAACCACTATCTAGGTTACCTGGAAGATATGTATGAAGACAAGAAGAAACAAAAGAAGGTTAAGGTCCGGTGGTTTCATCATGGTCGGGAAGTTAAGAATGTGATTCCACAACTGAATCTGCAAGAGGGAGAGGTTTTCATAACACCCCATGTTCAAGTGATCAGTGCTGAGTGTGTCAATGGTCCTGCAATTGTCTTGACCCCTAAGCATTATGAGAAATGTGCATCTGCTATGCAACACTCCTCGTCATCAGAGATCCATATATGTTCTCGGCAGTTCAAAAACAATAAACTTAAGCCCTTCACGCTCACTAAGCTGCGCGGATATAGTAACCAATCTGTGCTTTCTTTTTTGGGTGGTCCTGTTGTTTCCAAAAGAAAAGCCAAGAGTCATAAAATGGAGATAGACGATGAGGAGGACTTCACTCAAGACGATCCTCTAAGGTCCAGCAATAAGCGGAACAAAATTCCTAAGGGATATCAAGTACTTGAAAACGGTTCTATTGTTCTGCAAAACTCTGCTCTCAAAAAGAGTGAACAAAAGTACCCAAGTTTGAAGTTAACACTATCAAAAAAAACAATGGGTATCAAGTTTGTCGGACCTAAGCCTCAGCATCAATTGTCTTTTAATGTCGATGATAAGGTCGAGGTTCTCTGTCAAGATAGTGGCATTCGAGGATGCTGGTTCAGGTGTAAAATCTTGAGTGTAACTCAGAGGCAACTGAAGGTCCAATATGATGATCTTTTGGATGCAGACGACATCGACAAGCTAGAGGAATGGATCCCTGCAACTAGAGTAGCAGCTGCTGACAAACTGGGTATGCGGTGTTCAGGTCGCTTAACTGTGCGACCATTCCCTCCGAAAGATACTACAGATCATGCTTTTGAGATTGGAACTGCAGTAGATGCCTGGTGGAGTGATGGATGGTGGGAAGGTGTTATAACTGCAGTTGATGTTAGTGGAGCTGGAACATTTCAAGTTTATACACCTGGTGAAGCAAGGTTACTAACAGTCGAGAAGAAGGACATTCGGATTTCCCGAGATTGGTTTGATAACAGATGGGTTGATATAGTGGGAAGGCCTAACATTTGCAGCCAGTTACCTTCAAATGTTAGTCCTCATGTTGGGCTGTCAGCTAATTCTGCTGTGGTAGACGGATCTGTGTCCGGTGGTTCTGCTATATTAGAGAGCAAGTCATCGTCGGTTCCCAAAGTTGAAGTTGCTACGAAGGTTGAGCAAGAAATATCTGGTTTGGAAGCCCCCGATGAACCAGAAAGTTTGAAGGGAGTAGTAACTTTGGGGAAGCCACTAGCTGCCATCGAAGAAGACAAAGATACTTACTCTGGTGCTGGTGATCGCGAGGGTGAACCTGACACCATTGATGGTGATGATAAGGAGGAACTCGATCCCATTGAGAATCAAAAGGATGTCTCTCGTGGTGACACAGGAAAAAATGATGGTGGCTGTGACAAAGTTGAAGAGAATGGTGAGGGAAATTTGGTGTCAAAGGAACAACAACTTGATTCTGCAGAACAAAAACTTGATGCAGCAGAAGCAAGTAAAGTTGCATGA 2109 0.4386 MSGADAPVFLTWEERIICHERGNRVIHFYLKDSLGNSVLAVVGTERSVRHMMYVVPDHFLQAYGSAHSINACKWRARREVVEWLTCLVSRNHPSDSAVEVDDAAKALESLKLLSTGTSAHKNTLPDKLISRKLRFQSSDIEWSGIAWYCAKQLKHYPGFRRNGTTIYVHSFVYIMAEEENHYLGYLEDMYEDKKKQKKVKVRWFHHGREVKNVIPQLNLQEGEVFITPHVQVISAECVNGPAIVLTPKHYEKCASAMQHSSSSEIHICSRQFKNNKLKPFTLTKLRGYSNQSVLSFLGGPVVSKRKAKSHKMEIDDEEDFTQDDPLRSSNKRNKIPKGYQVLENGSIVLQNSALKKSEQKYPSLKLTLSKKTMGIKFVGPKPQHQLSFNVDDKVEVLCQDSGIRGCWFRCKILSVTQRQLKVQYDDLLDADDIDKLEEWIPATRVAAADKLGMRCSGRLTVRPFPPKDTTDHAFEIGTAVDAWWSDGWWEGVITAVDVSGAGTFQVYTPGEARLLTVEKKDIRISRDWFDNRWVDIVGRPNICSQLPSNVSPHVGLSANSAVVDGSVSGGSAILESKSSSVPKVEVATKVEQEISGLEAPDEPESLKGVVTLGKPLAAIEEDKDTYSGAGDREGEPDTIDGDDKEELDPIENQKDVSRGDTGKNDGGCDKVEENGEGNLVSKEQQLDSAEQKLDAAEASKVA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211918g00003 702 Gene3D - 131 291 IPR043151 -
Stsc211918g00003 702 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 379 598 - -
Stsc211918g00003 702 ProSiteProfiles BAH domain profile. 164 283 IPR001025 GO:0003682
Stsc211918g00003 702 SMART agenet_At_2 386 451 IPR014002 -
Stsc211918g00003 702 SMART agenet_At_2 472 530 IPR014002 -
Stsc211918g00003 702 MobiDBLite consensus disorder prediction 308 333 - -
Stsc211918g00003 702 MobiDBLite consensus disorder prediction 620 702 - -
Stsc211918g00003 702 Pfam BAH domain 165 276 IPR001025 GO:0003682
Stsc211918g00003 702 SMART BAH_4 164 283 IPR001025 GO:0003682
Stsc211918g00003 702 MobiDBLite consensus disorder prediction 620 637 - -
Stsc211918g00003 702 MobiDBLite consensus disorder prediction 647 677 - -
Stsc211918g00003 702 Coils Coil 672 699 - -
Stsc211918g00003 702 Pfam Agenet domain 391 466 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211918g00003 Stsc-Chr211918 8987 14759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211918g00003 400 528 PHD Transcription Factor Family AT5G58610 27.820 1.40e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211918g00003 - - gmx:100816046 879.396