Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211918g00002 ATGGGTCGCTCTCGCGGGAATTTTCACCACGCCGATGAGGACCCAAACCAAAGGTCAAGGAGAAAAAAGAATGCTGCTAGTGGAGAAAATTTAGAGCCTGGAGCTGCTGGGCAGGGAGCAAGTGAAGGGAAAAGGGCTTTGTATCACTGTAATTATTGTAATAAAGATATTACTGGAAAAGTCCGCATCAAGTGTGCTATGTGCCCCGATTTTGACCTATGTATAGAATGTTTTTCTGTTGGAGCGGAGGTGACGCCGCACAAAAGCAGTCACCCTTACAGGGTTATGGATAATTTATCTTTCCCTCTTATTTGTGCTGACTGGAATGCAGATGATGAAATTCTGCTTCTAGAGGGCATTGAAATGTATGGCTTGTCAAACTGGCCAGAAGTTGCTGAACATGTTGGGACAAAGAACAAAGAATCATGCACAGAACACTACAGAAATATATACTTGTACTCCGCATTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAAAAAAGAACTTCTTGCCATGGCAAAAGGACAGGGCGAGGACAAGAAAGGAATTTCCATGGCAGATGGTCTTAAGGAAGAATCTACCTTTTCTCCCTCTAGAGTCAAAGTTGAAGATTCTCATAAAGCTGGTTCCTCTGGCCCCAATCAGAAGGCCTCAAATGCAGCCCGTGGAAAAGACGGCGTTGGTGTTGTTAAATTGGAAGATTCTCAAGTAGACAGGAATTTTGGTGGAAAGAAGCCAAATTCCTCAGGAAATGAAGGTCCTTCATTGGTAGAATCCAGTGGTTATAATTCAAAAAGACAGGAATTTGATCCAGAATACGATAATGATGCTGAACAACTACTTGCTGAAATGGAATTTAAGGACACTGACACAGAGGAAGAGAGAGAGATAAAACTACGTGTCTTGCGTATCTATGGGAAAAGGCTTGATGAACGAAAGCGTAGAAAGGATTTCATTCTTGAAAGAAACTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGGCGATTTGTAGGAAATATGACATATTCATGCGCTTTCATACCAAGGAGGAACATGAGGAATTGCTTCGGACAGTTATTACCGAACACAGAACTCTTAAAAGACTTCAAGATCTCAAGGAAGCGCGGGCTGCCGGTTGCCGCAATGCAGCTGAAGCTGATAGGTATCTGTTACATAAGAGAAGAAAGGAAGCTGATGAAAGTGCACGTAGGGTAAAAGAATGCGCTCAGGGTGGCCCAAGCAATCAGGGGGTTCCAAATGCATTAATGTCTCCAGACTCTGCTGGCAAGGATTTGAGTGCCAGGCCTGCAGGACCTGCTACTTCAAGCTCTGTCAATGAAATGGATGTGACAGGATACTATGGGGCTGATTTACTTTCTGAACCTGAGAAACGCTTGTGCTGTGAACTAAGGTTGCCACCAGCCTTATATCTGAAGATGCAAGAGCAGCTGTCTCTACAAATACTTAGTGGCACCATCTCTGCAAAATCTGATGCTCATCAATTGTTCAAGATGGAAACTATCAAAATTGACAGGGTCTATGATATGCTCATCAAAAAGGGAATTGCTTCACCTTGA 1605 0.4312 MGRSRGNFHHADEDPNQRSRRKKNAASGENLEPGAAGQGASEGKRALYHCNYCNKDITGKVRIKCAMCPDFDLCIECFSVGAEVTPHKSSHPYRVMDNLSFPLICADWNADDEILLLEGIEMYGLSNWPEVAEHVGTKNKESCTEHYRNIYLYSAFFPLPDMSHVVGKNKKELLAMAKGQGEDKKGISMADGLKEESTFSPSRVKVEDSHKAGSSGPNQKASNAARGKDGVGVVKLEDSQVDRNFGGKKPNSSGNEGPSLVESSGYNSKRQEFDPEYDNDAEQLLAEMEFKDTDTEEEREIKLRVLRIYGKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKAICRKYDIFMRFHTKEEHEELLRTVITEHRTLKRLQDLKEARAAGCRNAAEADRYLLHKRRKEADESARRVKECAQGGPSNQGVPNALMSPDSAGKDLSARPAGPATSSSVNEMDVTGYYGADLLSEPEKRLCCELRLPPALYLKMQEQLSLQILSGTISAKSDAHQLFKMETIKIDRVYDMLIKKGIASP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211918g00002 534 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Stsc211918g00002 534 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Stsc211918g00002 534 CDD SANT 108 150 IPR001005 -
Stsc211918g00002 534 SMART sant 104 153 IPR001005 -
Stsc211918g00002 534 SMART zz_5 44 89 IPR000433 GO:0008270
Stsc211918g00002 534 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Stsc211918g00002 534 MobiDBLite consensus disorder prediction 1 39 - -
Stsc211918g00002 534 SUPERFAMILY RING/U-box 48 110 - -
Stsc211918g00002 534 MobiDBLite consensus disorder prediction 177 191 - -
Stsc211918g00002 534 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 529 - -
Stsc211918g00002 534 Pfam Myb-like DNA-binding domain 108 150 IPR001005 -
Stsc211918g00002 534 ProSiteProfiles SWIRM domain profile. 448 534 IPR007526 GO:0005515
Stsc211918g00002 534 FunFam Transcriptional adapter 2 449 533 - -
Stsc211918g00002 534 CDD ZZ_ADA2 48 96 IPR041983 -
Stsc211918g00002 534 SUPERFAMILY Homeodomain-like 101 152 IPR009057 -
Stsc211918g00002 534 MobiDBLite consensus disorder prediction 417 455 - -
Stsc211918g00002 534 FunFam Transcriptional adapter 2 101 153 - -
Stsc211918g00002 534 MobiDBLite consensus disorder prediction 177 273 - -
Stsc211918g00002 534 MobiDBLite consensus disorder prediction 245 268 - -
Stsc211918g00002 534 MobiDBLite consensus disorder prediction 1 27 - -
Stsc211918g00002 534 Gene3D - 449 533 IPR036388 -
Stsc211918g00002 534 Gene3D - 102 153 - -
Stsc211918g00002 534 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Stsc211918g00002 534 Gene3D - 40 96 IPR043145 -
Stsc211918g00002 534 FunFam Transcriptional adapter 41 96 - -
Stsc211918g00002 534 SUPERFAMILY Homeodomain-like 443 531 IPR009057 -
Stsc211918g00002 534 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Stsc211918g00002 534 PIRSF Txn_adaptor_ADA2 35 534 IPR016827 GO:0003713|GO:0006357|GO:0035065
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211918g00002 Stsc-Chr211918 2666 7522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211918g00002 1 532 EF-hand Containing Proteins AT3G07740 47.928 1.28e-162 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc211918g00002 Myb_DNA-binding 2.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211918g00002 K11314 - gmx:100811887 962.985