Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211910g00006 ATGACGGGGCATGCTGTGAAGGTTCATAGAGCCAAGCTCGAGGCGTGTTTGACATGTCCTTTGTGCAATAAATTGTTCAACAATGCCACCACCATTTCAGAATGCTTACACACTTTTTGCAGGGGATGCATAGACAAGAAGCTAATAGATGAGCAGTTAAAGCACTGCCCAGTATGCAATGCTGACTTGGGTTGTTCTCCACTTGACAAATTAAGGACAGATCATAGTCTACAAGATTTGAGGGACAGAATTTTGCCTCAAGAAAGAAAAATTGCCAAAACACCTAAGAAGTCTTCTGTGGCTTCAGTTAAAAAACAGAAGACAAAATCTCTGTCTTCTCTAAAAGCCAATGCAAGAGGAGCCAAAGCTACTCCTGAAAGAGAAGTTTTCGCTCCCACACAACCGGATTGTTCTTCTCCTAAGCCTGAGAAGGTGGAGGAAGATGTCAGGAAAGATGAGAAACAACCGCGGAGGATAGGAATCTTGGATGAAGTCTCTACAAAGCTAACTGCAAGAAGAGCAAAAGTAGTAGCTAGAAAAAAATACCTTCTGAAAGAGTTAACGCCTCCTTGCGAACCGGATAAAGTAATTGGAGATCAGAGGAAAGAAGATGATGATTGCTTTGTGCTCAAAATTTCCAGTGAGAGTTCAAATGCCAGAGTTCAGGATTCTTCAAAACCAGATTCTAGTCAACAAATAGTGCCAAACAAGATTCTAATGGACAATGTTGAATCATGTCAAGAAAAGCTTGATTTGTTTGAGCCATTAAATTCCTTTGTAGAAGCTGCAAGGAAGAACAAGTCTTGTAGTAAATCCACTATGCAAGAACATGCTGTCACTCCATCAGTAGAGTCTAGTGACAATGATTGCCAGCCAAAGGTTGAAGTTAAGAGACATTGTCACCAAACCAATGAAAATGATGATCAGAATGAATCAAATCCTTCGAGATCATCGGATACAAATGGAAGAAAACTCAAATTCTCAGAGGACTTGAATGTTCCAGTAGTGCAGCCTGTGATTACTTCAAATGGTGAAAGCAACAGAGGGTTTGGTCCAGTTTGGTTCTCCTTGGTTGCTTCTGAAGTGAGTGATGAAGGTGCACAATTGCCAAAAATATCCCCCAGCTTCTTAAGGATCAAGGATGGTAGTTTACTTGTTTCCCATATCAAAATGTACATAGTGAAGAAGCTTGGTCTTGTTAGTGAATCTGAGGTGGAGATCTCGTTGCAAGGTAAGCCGGTTCTACCTTGCATGGAGCTGCAACAGTTGGTTGAATTGTGGCTACAAACAAAGCCATTGAATGAGAAGTTTCAGACACATGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATATCATAGAAAGTCTTGA 1377 0.4089 MTGHAVKVHRAKLEACLTCPLCNKLFNNATTISECLHTFCRGCIDKKLIDEQLKHCPVCNADLGCSPLDKLRTDHSLQDLRDRILPQERKIAKTPKKSSVASVKKQKTKSLSSLKANARGAKATPEREVFAPTQPDCSSPKPEKVEEDVRKDEKQPRRIGILDEVSTKLTARRAKVVARKKYLLKELTPPCEPDKVIGDQRKEDDDCFVLKISSESSNARVQDSSKPDSSQQIVPNKILMDNVESCQEKLDLFEPLNSFVEAARKNKSCSKSTMQEHAVTPSVESSDNDCQPKVEVKRHCHQTNENDDQNESNPSRSSDTNGRKLKFSEDLNVPVVQPVITSNGESNRGFGPVWFSLVASEVSDEGAQLPKISPSFLRIKDGSLLVSHIKMYIVKKLGLVSESEVEISLQGKPVLPCMELQQLVELWLQTKPLNEKFQTHVGSSAKDFVMVLSYHRKS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211910g00006 458 SMART ring_2 19 59 IPR001841 -
Stsc211910g00006 458 MobiDBLite consensus disorder prediction 307 321 - -
Stsc211910g00006 458 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Stsc211910g00006 458 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Stsc211910g00006 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Stsc211910g00006 458 MobiDBLite consensus disorder prediction 92 154 - -
Stsc211910g00006 458 MobiDBLite consensus disorder prediction 140 154 - -
Stsc211910g00006 458 SUPERFAMILY RING/U-box 13 85 - -
Stsc211910g00006 458 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 457 IPR044807 GO:0004842
Stsc211910g00006 458 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Stsc211910g00006 458 MobiDBLite consensus disorder prediction 99 117 - -
Stsc211910g00006 458 CDD RING-HC_PCGF 17 60 - -
Stsc211910g00006 458 MobiDBLite consensus disorder prediction 301 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211910g00006 Stsc-Chr211910 31185 33630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211910g00006 1 114 C3H Transcription Factor Family AT2G30580 53.448 4.02e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211910g00006 K16277 - pop:7474161 311.612