Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211906g00004 ATGTCAAAACCTTACGATGCCATACCAATGCCCAATCCCAACGATATGAGTACACCAAACCACAGTGAAGCAGGGGAAAAAGAAGGTTTAAGTGGCACCAAAAGGAGAAAGTGCAACAAAACCACTGCTCGGAAAAGAGTTTCCAAGAGTAGCACAACAAAGAAAAATGTATTGGCTAATGGAATTAAGGAGGTAGTTTCATCAGACTCAGTTCAGAAGATTGATTTGCTGTTGGAGGCGAAATTATCAGCAGAGGAGAATTCGAGGATGTATGCAGGGCGGCAAATACACCCATTTTTTTCTTCATGGAAATTAGGGAAGAAATCTCAGGAGCTGAATAAGACAGAACCTACTTTATGCACGGATAGGACAGAGGATAGAAGAAAGTTTTCTGGTCCTGTTCATGTTTTTGAAAATTGTCAGGATGATACCTCATCCCTTGACTGGAATAACTGGACATTTTTGGGGACGACTACGATTGCAAAATACAGTTCAGAAACTTCAAATTTGCCTGTTTTGATGGGTTCTGTTGAACCCTTAAATTTCGATAACCTTCATAGTGCTGTGGACCAATCCCATGCTTTAATTTCTCAGAATTCTATGTCATGTTTAGATGGTCAGCTTCTGCAAGAAATATCACTAGCAAACTCAGCTGTGCTACCTAATGAGCAACCAGTATGCCTTTCAAAGCCAGATGATTCCAAGATGGATTTGGAGGTTGATGGAGTTGGTACTTTTTCAGGGCAAGCAGGTTGTTTCAGATCATCAGAAACGCAGCCCCGGAATAGATTTCTCCAAGAAAGTATGAACTCTTACTACCATAGTTGTGAAGGTAAGTCCGAGGGAAGCTTATGGACTCACAAGTACAAGCCAACAAAGGCCTCTCAGGTGTGCGGTAATTATGAATCTGTAAATTTCTTGCATGAGTGGTTAAAACTTTGGAGGGAAAGACGCAATCATAGAAAAATGTATTCCACTAATGAGGATCAAAGTGACTCGCAAGACTATGATTATAATGGTTCTGATTGTGACTATGATCCTGAAAAAGTTAATCAGGACAAATTCTTGCGGAATGTTCTTGTAATTACAGGACCTGTTGGGAGTGGCAAGTCTGCAGCTGTATATGCTTGTGCCCAAGAGCAAGGATTTGAAGTTTTAGAGCTCAATGCATCAGACTGGCGAAATGGGACTGCTGTCAAGCGGTATTTTGGAGATGCTCTTGGATCACATGGCTTGAAAAGTGTGTGTTCACAGGAGCAAAAAGCTGTGAAATTGCCCTCAGCTCCAGCTTTTCCTAATGATAAAGCAGCAGAAGATATTGATAAGGATGTGATTGAACTCATAACCATATCTGATGATGGATCCCAGAGTCCTGACAGGACATCTTGGAGCTTACCTAGCAAAAATGGTGAATTTACATTACATGCATTAATTCTAGTTGAGGATGTGGATGTCCTTTATCCTGAAGATCGTGGATGCATTTCTGCCATACGGCACATTGCTGAGACAGCAAAAGGGCCAATTATATTGACCAGCAATAGTAATAAGGTTGGCCTTCCAGATAATTTTGATAGACTAAATATTTCATTCTCATTGCCATTAGCAGATGAGTTGCTTTGCCATTTGTACATGGTTTGTGTCACAGAAGATGTCAAAAACAGCCCTCTTTTACTTGAGAGATTTATAATATCTTGCAACGGAGATATTCGCAAAATCATCATGCAACTTCAGTTCTGGTTCCAGAGTAAAAGATACACAAAAGATCAGAAAGTGCAGACAGCTTATAACTCAATTCCATTTGATCTTGAGGCTACTCATCAGATACTACCAAAGATAATACCATGGAGTTTTCCTTCAGAGTTGTCCAAACTAATTGAGAAGGAAGTTGCCAACTCAATAACCATAATGGAAGAAAACTCATGCATGCAGGGTTTAGTTACGAAAGAGTTTCATGCAAATGAAAGGAAAATTGATTCAGATGTGCAATCCATGGAGTCTAATTGTGTGGATGCCTCCAAAGGGAAAAGATCTATTTCAAAGTGCAGCAAGTCCAAAAGTCAATATAGTACTATGTTTGAGCTTTCTAGTTGTTCTGGACTCCAAGGAGTATCATATTGCCAAAACTGCCAAGAAAAGCGTCTGATTTCCTCTGGTTCTGTAAATAAGGATCCAAATGATAATGGACAGTCCACATATTTTGAACCTTCTTACAGTGGACAACCCTTTGAAGTCAGCAAAGAATTTTCCTGCAAGTTTCAATCTGAAACATACACCAGCATGTCATTTCACAAGATAGGTTGTTCTGGTTTGGATGATTGTAAATGTTCTGAAACAGCTGATGTTGCATGCTTAACTGAAACTTGTAAACCGTTTGATCTACCCTGTGTTCCGGAATTAACATATTCAAATGGGACTGCAACTGAAAATAGAATAGGGACCACGTTTACTGCAGTGTCTTCTGGCCTTATTTCTGGTCCAACTAAATCTTTTCCAAATAGTTTTACTCCTTTTGCTCTCAGTGATTATCAGGGAATATCCAAATTCCCGCAGAAATTGGAACCACTTGATGCTAGAATTCAAGAATCTTATTCTACAGAGGCTGTACAAGATTTCAAACCAAATTCAGAGTTCGACTCCAATTTGATTAGCGAAACAGATGTGGTTCAAAATCTGTGGAGGAAACTTCGTGATGGCCGACTGGATCTAAGACAGCATGGCACTGCAGAACAGCTAGGCGCTATTCAAGTTGTTAAACTTGCAAGTGGGTTGAGCAATCTACTTTCTGAAAGTGACCTGTTATTTCGCAATCATCAAGAAAAGCAATGTGGTATCATGGAACATCCCAAGTTCCTTTCTGATGAAGCCACATTTAGTTGGTATGATGAGCAAGCAATGATGTCCACAGTTGCCGTTCACGGGTTTTGTTTTTATGCTAAATGTATTTCAGATGTGGGATCTATCTTCGGTTTTGAGCCTAAGAACAATACAGATATAATTTCGGAAATGTTGGCTTCCACGACTAATCTTATGACACTGGGGAAGTTATCTAGACAGGATCCCCAAAAAATCGCAACTCTATATACGAATAAACAATTTGAAGTGAAGAAAACAATGAACGACACAAAGAGCGAAAGCAAAACATCTCTGACGAAGGTGATCCAGTCCATTGTTCCTACGAGATTGTTGCTGGCGCTGAAAGGCACTGCATTCAACGAGTATCTATCTTCGGTGCGCCAAATTTCAATTTCAGAAGGATTGCGCATCTTACAAGGTGTTGAGAAGAAGAGGGGACGAAGGGCCCGGAGTGCTCAACATTACTTGAGCAGAGGCACAATGATGTCTCCTGAAGATATATCATTGGTATGTCAGGGTGATTTGTACAGTAAGATGTCTTCAAAATTCGCAGCTGAGGCGAAAAGCAACTCTACATGA 3432 0.4018 MSKPYDAIPMPNPNDMSTPNHSEAGEKEGLSGTKRRKCNKTTARKRVSKSSTTKKNVLANGIKEVVSSDSVQKIDLLLEAKLSAEENSRMYAGRQIHPFFSSWKLGKKSQELNKTEPTLCTDRTEDRRKFSGPVHVFENCQDDTSSLDWNNWTFLGTTTIAKYSSETSNLPVLMGSVEPLNFDNLHSAVDQSHALISQNSMSCLDGQLLQEISLANSAVLPNEQPVCLSKPDDSKMDLEVDGVGTFSGQAGCFRSSETQPRNRFLQESMNSYYHSCEGKSEGSLWTHKYKPTKASQVCGNYESVNFLHEWLKLWRERRNHRKMYSTNEDQSDSQDYDYNGSDCDYDPEKVNQDKFLRNVLVITGPVGSGKSAAVYACAQEQGFEVLELNASDWRNGTAVKRYFGDALGSHGLKSVCSQEQKAVKLPSAPAFPNDKAAEDIDKDVIELITISDDGSQSPDRTSWSLPSKNGEFTLHALILVEDVDVLYPEDRGCISAIRHIAETAKGPIILTSNSNKVGLPDNFDRLNISFSLPLADELLCHLYMVCVTEDVKNSPLLLERFIISCNGDIRKIIMQLQFWFQSKRYTKDQKVQTAYNSIPFDLEATHQILPKIIPWSFPSELSKLIEKEVANSITIMEENSCMQGLVTKEFHANERKIDSDVQSMESNCVDASKGKRSISKCSKSKSQYSTMFELSSCSGLQGVSYCQNCQEKRLISSGSVNKDPNDNGQSTYFEPSYSGQPFEVSKEFSCKFQSETYTSMSFHKIGCSGLDDCKCSETADVACLTETCKPFDLPCVPELTYSNGTATENRIGTTFTAVSSGLISGPTKSFPNSFTPFALSDYQGISKFPQKLEPLDARIQESYSTEAVQDFKPNSEFDSNLISETDVVQNLWRKLRDGRLDLRQHGTAEQLGAIQVVKLASGLSNLLSESDLLFRNHQEKQCGIMEHPKFLSDEATFSWYDEQAMMSTVAVHGFCFYAKCISDVGSIFGFEPKNNTDIISEMLASTTNLMTLGKLSRQDPQKIATLYTNKQFEVKKTMNDTKSESKTSLTKVIQSIVPTRLLLALKGTAFNEYLSSVRQISISEGLRILQGVEKKRGRRARSAQHYLSRGTMMSPEDISLVCQGDLYSKMSSKFAAEAKSNST 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211906g00004 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 596 IPR027417 -
Stsc211906g00004 1143 MobiDBLite consensus disorder prediction 37 51 - -
Stsc211906g00004 1143 MobiDBLite consensus disorder prediction 1 54 - -
Stsc211906g00004 1143 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 26 1132 IPR004582 GO:0006281
Stsc211906g00004 1143 Gene3D - 282 526 IPR027417 -
Stsc211906g00004 1143 Gene3D - 533 597 - -
Stsc211906g00004 1143 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 535 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211906g00004 Stsc-Chr211906 24344 32457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211906g00004 285 578 Core DNA Replication Machinery Family AT5G22010 22.559 3.00e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211906g00004 K26118 - gmx:100815984 1045.03