Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211905g00006 ATGGGAAACAATAGTTGGCATGTCAAGGGTTTCCAAGTTAAGGGTAGTAGTAAAGATTCAATCTTTTTGGCCATTTTCATGTTCATTCATGTCTTGGCTTCTACCATTGAACCTGTTGCATGCCACCTGTATGATGGAGTGATTGTGACAGAATCAGATTACCAGGCCTTAAGGGCCATCAAGCATGAGCTCATTGACTTCAAAGGGGTTCTGAGGAGCTGGAATGATAGTGGCAGAATCTCAGAGAAAATTGGTCAGCTTCAAGCACTCAGGAAGCTGAGTCTCCATGACAATGTTCTTGTTGGTCCTGTCCCTTTTTCTTTAGGGTTCCTTCCAAATCTTAGAGGTGTTTATCTCTTCAATAACAGGCTTTCAGGTTCTATTCCTCCTTCTATTGGTAGTTGTCCAATGCTTCAGTCTTTTGATGTTAGCAATAACTCACTCACTGGTAATATCCCTGCTAGTTTGGTAAATTCAAGTAGGATATTCAGGATCAATTTGAGCTTTAATTCACTTACTGGTTCCATTCCTAGGAGTTTCACTATGTCTCAATCCCTTACTATTCTTGCCCTCCAACACAACAATCTTTCTGGTCCTATACCAGATTCTTGGGGTGGAATGGGAAAGGGAAAGAGAGTTCCCCAACTTCAAGTTTTGACCCTTGATCACAACCTCATTTCTGGTTCCATTCCTATCTCTCTGGGTAACATGGTTTCACTTGAAAATGTTTCTTTGAGTCATAACCAAATTGAAGGCTCTATTCCAAGTGAGCTAAGTTCACTTTCAAGGCTTCAAAATCTTGATCTTTCACACAATGCCATCAATGGCAGCTTCCCTGCTAGCTTCTCCAACCTTTCTTCTCTTGTTTCATTGAATTTAGAGGGTAATAAACTTGAGAGCCATATCCCTGATAATTTGGATNNNNNNNNNNCAGTGCTTAACCTCAAGAACAATAAGCTTAATGGCCAAATCCCACCAACAATAGGGAATATCTCAGGCATTAGGCAAATTGATATGTCTGGAAACAAATTCATGGGGGAAATTCCGGATTCATTCACCAAACTAGCAAATCTCACTTCATTCAATGTCTCTTACAACAATCTCTCTGGTCATGTCCCTTCACTTTTCACCAAAAGATTCAACTCTAGCTCTTTTGTTGGGAATCTAGAACTATGTGGTTACCTTTCAAAACCATGCACTTCACCTCCACCTTCAATTCTTCCATCACAAACACCAAACCCTTCTCCAGAGCTACATCATCACAGAAAGCTAAGCACCAAGGACATAATCCTCATTGTAGCAGGTATTCTCCTGTTGATTCTGTTACTCCTGTGCTGCTTTTTGCTGTGTTGTTTGATCAGGAAAAGAGCTGCTTCAAGTAGAAAGGGTGCAAAGGCAACATCCAAGGCTTCAGCATCTGCAAGGAGTGTTGAAAAAGGTGGTGCTGGTGGTGAAGTTGAGTCAGGAGGTGAAGCTGGTGGAAAACTTGTTCACTTTGATGGTCCATTTGTGTTCACTGCTGATGATCTATTGTGTGCAACTGCTGAGATAATGGGAAAGAGTGCATATGGAACAGCATACAAGGCCACATTGGAGGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGAGAGAAGAGTACAAAAGGTCCTAAGGAGTTTGAAGCTGAGGTTGCTGCTCTTGGCAAAATCAGACACCCAAATCTCTTAGCACTCAGAGCTTATTATTTGGGTCCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCAAAAGGAAGCCTAGCATCATTCCTTCATGCTCGCGGGCCTGAAATTGTGATCGATTGGCCGACAAGGATGAAGATAGCGATCGGAGTCACACGCGGACTGAGCTACCTCCACAACCAAGAGAACATAATCCATGGCAATCTCACCTCAGGGAACATACTCTTAGATGAAGAAACCAATTCACACATAACAGATTTTGGACTCTCCAGGCTAATGACAACCTCGGCAAACACAAACATCATTGCAACAGCAGGAAGTCTAGGATACAATGCACCGGAGATCTCGAAAACCAAGAAACCGAACACGAAATCCGATGTATACAGCCTTGGAGTCATCATCTTGGAGCTACTAACTGGGAAGCCACCTGGGGAGCCAACCAATGGCATGGACTTGCCACAATGGGTGGCTTCCATAGTTAAAGAAGAGTGGACTAATGAAGTTTTTGACTTGGAACTCATGAGGGGTGCACCAGCCATAGGTGATGAGCTTCTTAACACATTGAAGCTGGCACTTCATTGTGTTGATCCTTCACCAGCTTCTAGGCCTGAAGCACAGCAAGTTCTTGGCCAATTGGAAGAAATCAAGCCGGATTTGGCTGCTGGTGATGATGATGATGATGGAGCTCCCAAGACTGTTGAATAA 2409 0.4288 MGNNSWHVKGFQVKGSSKDSIFLAIFMFIHVLASTIEPVACHLYDGVIVTESDYQALRAIKHELIDFKGVLRSWNDSGRISEKIGQLQALRKLSLHDNVLVGPVPFSLGFLPNLRGVYLFNNRLSGSIPPSIGSCPMLQSFDVSNNSLTGNIPASLVNSSRIFRINLSFNSLTGSIPRSFTMSQSLTILALQHNNLSGPIPDSWGGMGKGKRVPQLQVLTLDHNLISGSIPISLGNMVSLENVSLSHNQIEGSIPSELSSLSRLQNLDLSHNAINGSFPASFSNLSSLVSLNLEGNKLESHIPDNLDXXXXVLNLKNNKLNGQIPPTIGNISGIRQIDMSGNKFMGEIPDSFTKLANLTSFNVSYNNLSGHVPSLFTKRFNSSSFVGNLELCGYLSKPCTSPPPSILPSQTPNPSPELHHHRKLSTKDIILIVAGILLLILLLLCCFLLCCLIRKRAASSRKGAKATSKASASARSVEKGGAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKSTKGPKEFEAEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPEIVIDWPTRMKIAIGVTRGLSYLHNQENIIHGNLTSGNILLDEETNSHITDFGLSRLMTTSANTNIIATAGSLGYNAPEISKTKKPNTKSDVYSLGVIILELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRGAPAIGDELLNTLKLALHCVDPSPASRPEAQQVLGQLEEIKPDLAAGDDDDDGAPKTVE 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211905g00006 802 SMART LRR_typ_2 261 284 IPR003591 -
Stsc211905g00006 802 SMART LRR_typ_2 111 135 IPR003591 -
Stsc211905g00006 802 SMART LRR_typ_2 213 237 IPR003591 -
Stsc211905g00006 802 SMART LRR_typ_2 285 309 IPR003591 -
Stsc211905g00006 802 SMART LRR_typ_2 355 378 IPR003591 -
Stsc211905g00006 802 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 207 402 - -
Stsc211905g00006 802 Gene3D Transferase(Phosphotransferase) domain 1 590 795 - -
Stsc211905g00006 802 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 105 200 - -
Stsc211905g00006 802 MobiDBLite consensus disorder prediction 765 802 - -
Stsc211905g00006 802 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 215 783 - -
Stsc211905g00006 802 Pfam Protein tyrosine and serine/threonine kinase 516 779 IPR001245 GO:0004672|GO:0006468
Stsc211905g00006 802 FunFam Leucine-rich repeat receptor-like protein kinase 498 588 - -
Stsc211905g00006 802 SUPERFAMILY L domain-like 73 398 - -
Stsc211905g00006 802 CDD STKc_IRAK 518 783 - -
Stsc211905g00006 802 ProSiteProfiles Protein kinase domain profile. 512 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211905g00006 802 Pfam Leucine rich repeat 259 298 IPR001611 GO:0005515
Stsc211905g00006 802 Gene3D Ribonuclease Inhibitor 48 210 IPR032675 -
Stsc211905g00006 802 FunFam Pollen receptor-like kinase 1 589 794 - -
Stsc211905g00006 802 SUPERFAMILY Protein kinase-like (PK-like) 516 784 IPR011009 -
Stsc211905g00006 802 Gene3D Phosphorylase Kinase; domain 1 518 589 - -
Stsc211905g00006 802 Gene3D Ribonuclease Inhibitor 211 403 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211905g00006 Stsc-Chr211905 34109 36943 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211905g00006 42 785 Receptor kinase-like Gene Family AT3G51740 65.090 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc211905g00006 PK_Tyr_Ser-Thr 3.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211905g00006 - - aip:107625805 1250.73