Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211905g00004 ATGGCCACTGAAATCGTTTCTGGAAACAGGAATTCGTCGAAGAGGCGCAGGTGTGGAAGTGATTCCTTGGAGGACACTCTTGAGAAGTGGAAGAAGAACAACAACAACAATCAACATAGTTTTTCCACAAATGGGGTGCAAGTGATTCACAAAGTTCCTGCAAAAGGGTCCAAGAAAGGGTGCATGAAAGGTAAAGGAGGGCCTCAGAACTCTGAGTTTAGGTACAGAGGTGTGAGGCAGAGGATTTGGGGTAAGTGGGTTGCTGAAATTCGCGAACCGATCAGCAGCCATGTGTGTAAGAAGAATGCAAAGAGGCTTTGGCTTGGCACTTTCACCACTGCATTTGAGGCTGCTCTTGCTTATGACAAAGCAGCTAAGACAATGTATGGTTCAGGCGCGCGTTTGAACTTTCCGGAGCATGATTTGGAGTCAGTAGGCTCTGAAGAATCATCAAGTAAGAATGGAATTATATTGAGTAATGGTGAGGCTCTTAAAAGTGAGGATTTGGATAGTAACTTTCATCAGTTTCACGAAGACAAACTAAATCTTTCTGATGTTGGAGCATTGGAGGGAACAAAGGAAGAAGAAGAACATGTGCAAACTGGGAAATTCCAAGATCAAAAAAATGAGACACATGATGATGAAAGTGTTATTCTTAAGGAAATGAAGGATATTGAAGCTGAAATACCCGGAGAAAGTGAAGGAATCGAAGGAGAATCGGAAGAGGCTTTGGAGTGTTCTAGCTCTGTTGTTGAGTTTATTGATATGGCAATGAATTCTGGAGCTGATGGCGCGGCTTCTGATGCCAACGAGCATGAGATTGTAGCGAAAAATATAGAAGAAACAATGGAAGAATCGACTGGAAGTTTAACATCATCATGTGATTTGAGCAATATTGACAACCATTGTGATGATTACTTTAACAATCAGATATCAGATGAGGATTGCAACCCCAAACCCAATTATGATCAGTCTAACATCCAAACTGAGGCATATATGGTGAAGAAGAAACAGATGGAGGAAGTAATTTCTGAAATTCTAAGACTTTATAGCAACAAGTTCTCAAATAACTATATTCACTCTCAAAATGAGAATCATGAACATAAGCAACTTTTTGTTCATGTTAAAGAGGAGAAGGCGTTAATGCCAATAGAAGCTGACATGCTACAAACTTGCAACTGCTACAGCTGCGATAATAGCGATGATGAAATTAAAATGGATCCTAACGTTTCAGATGACAATGTTGGAGAAAGGTATGAGTTTGAGGCTTTGAACATCAACATTGATAGAAATCTTGAATTGCAAGAAAAACAAGATGTTGGAAATGTGTTATCTGAATTCAGCTCCATGCAGAATAGGAAGCTATGTGAACATCTGAATAATATGCAGGTTGCTAGCATGGAAATGGATCATGATTATAGTTTCCTGAAACCTGACTATGATTTTGGGTTATTAGAAGAGCAGAAATTACTTGATTCATGCTTTTCACATTTAGGATCTTAG 1503 0.3945 MATEIVSGNRNSSKRRRCGSDSLEDTLEKWKKNNNNNQHSFSTNGVQVIHKVPAKGSKKGCMKGKGGPQNSEFRYRGVRQRIWGKWVAEIREPISSHVCKKNAKRLWLGTFTTAFEAALAYDKAAKTMYGSGARLNFPEHDLESVGSEESSSKNGIILSNGEALKSEDLDSNFHQFHEDKLNLSDVGALEGTKEEEEHVQTGKFQDQKNETHDDESVILKEMKDIEAEIPGESEGIEGESEEALECSSSVVEFIDMAMNSGADGAASDANEHEIVAKNIEETMEESTGSLTSSCDLSNIDNHCDDYFNNQISDEDCNPKPNYDQSNIQTEAYMVKKKQMEEVISEILRLYSNKFSNNYIHSQNENHEHKQLFVHVKEEKALMPIEADMLQTCNCYSCDNSDDEIKMDPNVSDDNVGERYEFEALNINIDRNLELQEKQDVGNVLSEFSSMQNRKLCEHLNNMQVASMEMDHDYSFLKPDYDFGLLEEQKLLDSCFSHLGS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211905g00004 500 Gene3D AP2/ERF domain 74 139 IPR036955 GO:0003700|GO:0006355
Stsc211905g00004 500 SMART rav1_2 74 144 IPR001471 GO:0003700|GO:0006355
Stsc211905g00004 500 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 311 - -
Stsc211905g00004 500 FunFam Ethylene-responsive transcription factor 2 74 139 - -
Stsc211905g00004 500 ProSiteProfiles AP2/ERF domain profile. 74 138 IPR001471 GO:0003700|GO:0006355
Stsc211905g00004 500 SUPERFAMILY DNA-binding domain 74 138 IPR016177 GO:0003677
Stsc211905g00004 500 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Stsc211905g00004 500 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Stsc211905g00004 500 MobiDBLite consensus disorder prediction 1 25 - -
Stsc211905g00004 500 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
Stsc211905g00004 500 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Stsc211905g00004 500 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211905g00004 Stsc-Chr211905 25862 27924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211905g00004 14 213 AP2-EREBP Transcription Factor Family AT2G40340 41.818 1.17e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211905g00004 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211905g00004 - - aip:107625804 764.607