Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211905g00002 ATGACACACACTACGCTTATCTATTTTCTCTTACTACTCTTCCCTTCCGCGCTTTCTCTCTCCTCCGACGGCCTCGCCCTTCTCTCTCTAAAGTCCGCCGTCGACGGTGGCGCACTCACATTCTCCGATTGGAACGACGGAGATTCCACGCCGTGCCAGTGGTCTGGCATCTCATGTTCGAACATCTCCAGCGAGTCTGAGCCTCGCGTCGTCGGCATCGCGCTCGCCGGGAAATCACTCCGGGGATATATTCCGTCGGAGCTTGGGACACTAAGGTACCTCCGGCGACTCAATTTACACGACAATGAATTCTACGGCGTTGTTCCGGTACAGCTCTTTAACGCTACCGCGCTTCATAGCTTGTACCTCCACCGGAACAACCTCTCCGGTCCGTTTCCTCCGTCACTCTGCACACTTCGCCGCCTCGAGAACCTCGATTTCTCCGAGAATTCGTTCTCCGGCAACCTGCCGCCGGAGCTCAAGGACTGCAAGCAGCTTCAGAGGCTGATTCTGGCCAGGAATAAATTTTCCGGCGCTATTCCGGCCGATGTGTGGTCAGGGATGGATGAGCTCGTTCAGCTCGATCTCTCCGATAATCAATTCGAAGGTCCGATCCCTGATGGACTCGGCGATTTGAGTTCTCTCTCCGGCACGCTAAACCTCTCGTTCAATCACTTATCCGGTAAGATTCCGGCGTCCCTTGGGAAGTTACCGGCGACCGTGAGCTTCGACCTCCGNNNNNNNNNNGACAACAATCTAACCGGCGAGATTCCGCAAACAGGCTCATTTTCAAATCAGGGCCCCACTGCCTTCCTTGGGAATTCAAACCTTTGCGGATTTCCGTTAAGAAAATCATGCAACGGTTCGGATTCATCAGGCCGGGGCTCGCAGGAAGGTCCCGACGCAGCACACGCCGGAACCTTCCATTCAGCAAAAGGCCTGAGCCCAGGCCTGATAATCCTGATCTCAGCAGCAGACGCCGCTGCGGTCGCCCTCATCGGGCTAGTAATTGTATATGTTTATTGGAAAAGGAAGGATGATGGCAATGCCTGTAGCTGTGCAGGGAAGAGCAAATTTGGCGGCGGTGGCGGCGATGAGAAAATGAATTTGTGTGCAATGCAATGCATGAATGGAGGGAAGAGCGATGAGGAGGAGGAGGAAGAGGAAGAGGGAGAAGGTGGAAGAGTTGAAGGGGGTTTGGTGAACATAGACAAAGGGTTTAGGTTTGAGCTTGATGAGCTTCTAAGAGCATCGGCATATGTGTTGGGGAAGAGTGGGTTGGGGATAGTGTACAAGGTGGTGCTTGCTAATGGTGTGCCTGTGGCGGTTAGGAGATTGGGAGAGGGTGGTGATCAGAGGTATAAGGAGTTTGCTGCTGAGGTTCATGCCATTGGGAAGGTTAGGCACCCTAACATTGTGAGGTTGAGGGCTTATTATTGGGCACATGATGAGAAGCTTCTCATCTGTGATTTCATCTCTAATGGCAATTTGGCCCAAGCACTTCGAGGGAGAAGTGGACAACCATCTCCAAACCTTTCTTGGTCAACAAGGCTTAGAATAGCCAAAGGAGCAGCAAGAGGCTTGTCCTATCTCCATGAATGCAGTCCAAGAAAGTTTGTCCATGGTGATATCAAACCTTCCAACATCCTGCTTGACAATGACTACCAACCATACATATCCGATTTCGGCCTCAACCGGCTAATCAGCATCACTGGCAACAACCCGTCAACCGGCGGCCTAATGGGCGGAGCACTTCCATACATGAACTCATCACAGAAAGAGAAAACCAACAACTACAAGGCACCCGAGGCGCGCTTCCCCAGCTCCAGACCAACACAGAAATGGGATGTGTATTCATTTGGGATTGTTCTGCTTGAATTGCTAACCGGTAGGACTCCGGAATCTTCTCCGACGACTTCAAGTTCTTCAGTGGAAGTTCCTGATTTGGTAAGGTGGGTGAGGAAAGGGTTTGAACAAGAGAGTCCCTTGTCTGAAATGGTTGATCCATCATTGCTACAAGAAGTGCGAGTAAAGAAAGAAGTGTTGGCTGTTTTTCATGTAGCACTAGCATGCACTGAAGGTGACCCTGAGGTTAGGCCTAGAATGAAAACTGTCTCTGAAAATCTTGAAAGGATTGGATCATAG 2145 0.5091 MTHTTLIYFLLLLFPSALSLSSDGLALLSLKSAVDGGALTFSDWNDGDSTPCQWSGISCSNISSESEPRVVGIALAGKSLRGYIPSELGTLRYLRRLNLHDNEFYGVVPVQLFNATALHSLYLHRNNLSGPFPPSLCTLRRLENLDFSENSFSGNLPPELKDCKQLQRLILARNKFSGAIPADVWSGMDELVQLDLSDNQFEGPIPDGLGDLSSLSGTLNLSFNHLSGKIPASLGKLPATVSFDLRXXXDNNLTGEIPQTGSFSNQGPTAFLGNSNLCGFPLRKSCNGSDSSGRGSQEGPDAAHAGTFHSAKGLSPGLIILISAADAAAVALIGLVIVYVYWKRKDDGNACSCAGKSKFGGGGGDEKMNLCAMQCMNGGKSDEEEEEEEEGEGGRVEGGLVNIDKGFRFELDELLRASAYVLGKSGLGIVYKVVLANGVPVAVRRLGEGGDQRYKEFAAEVHAIGKVRHPNIVRLRAYYWAHDEKLLICDFISNGNLAQALRGRSGQPSPNLSWSTRLRIAKGAARGLSYLHECSPRKFVHGDIKPSNILLDNDYQPYISDFGLNRLISITGNNPSTGGLMGGALPYMNSSQKEKTNNYKAPEARFPSSRPTQKWDVYSFGIVLLELLTGRTPESSPTTSSSSVEVPDLVRWVRKGFEQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEVRPRMKTVSENLERIGS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211905g00002 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 492 714 - -
Stsc211905g00002 714 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 139 712 IPR046959 -
Stsc211905g00002 714 FunFam Leucine-rich repeat receptor-like protein kinase 399 491 - -
Stsc211905g00002 714 FunFam Leucine-rich repeat receptor-like protein kinase 20 182 - -
Stsc211905g00002 714 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Stsc211905g00002 714 CDD STKc_IRAK 422 712 - -
Stsc211905g00002 714 SMART serkin_6 420 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211905g00002 714 SUPERFAMILY L domain-like 21 283 - -
Stsc211905g00002 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Stsc211905g00002 714 FunFam Leucine-rich repeat receptor-like protein kinase 190 288 - -
Stsc211905g00002 714 Gene3D Ribonuclease Inhibitor 185 288 IPR032675 -
Stsc211905g00002 714 Gene3D Phosphorylase Kinase; domain 1 407 491 - -
Stsc211905g00002 714 Pfam Protein kinase domain 421 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211905g00002 714 Gene3D Ribonuclease Inhibitor 20 184 IPR032675 -
Stsc211905g00002 714 Gene3D Transferase(Phosphotransferase) domain 1 492 714 - -
Stsc211905g00002 714 SUPERFAMILY Protein kinase-like (PK-like) 421 709 IPR011009 -
Stsc211905g00002 714 ProSiteProfiles Protein kinase domain profile. 416 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211905g00002 Stsc-Chr211905 15629 20267 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211905g00002 17 712 Receptor kinase-like Gene Family AT1G67510 66.433 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc211905g00002 Pkinase 6.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211905g00002 - - gmx:100793996 1015.76