Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211905g00001 ATGAAGCAAGTTGTAGGAATGGTGGTTTCCAACAAGATGCAGAAGTCGGTGGTGGTGGCAGTGGACAGGCTTTTCCACCACAAAGTGTACAACCGATACATCAAGCGGACTTCTAAATTTATGGCACATGATGAGAACAATCAATGTAACATTGGTGATCGAGTTCGACTGGATTCTTCTAGGCCTTTGAGCAAGCGTAAACACTGGGTTGTTGCTGAAATTCTCAAGAAAGCACGCATATATACTCCTCCCACTGCACCTGTATCTGCGAACGTAACCTCCAGCTCCAGCACTGGAACACCTACTCCCTAA 312 0.4615 MKQVVGMVVSNKMQKSVVVAVDRLFHHKVYNRYIKRTSKFMAHDENNQCNIGDRVRLDSSRPLSKRKHWVVAEILKKARIYTPPTAPVSANVTSSSSTGTPTP 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211905g00001 103 Gene3D - 1 97 IPR012340 -
Stsc211905g00001 103 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Stsc211905g00001 103 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
Stsc211905g00001 103 FunFam 30S ribosomal protein S17 1 100 - -
Stsc211905g00001 103 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 82 IPR000266 GO:0003735|GO:0005840|GO:0006412
Stsc211905g00001 103 SUPERFAMILY Nucleic acid-binding proteins 2 88 IPR012340 -
Stsc211905g00001 103 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Stsc211905g00001 103 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Stsc211905g00001 103 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Stsc211905g00001 103 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211905g00001 Stsc-Chr211905 9970 11996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211905g00001 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 38.028 5.88e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211905g00001 K02961 - gmx:100794499 167.162