Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211904g00004 ATGGCTTCTTCATCATCTTCTTCTTTATTGAATGTTCCTAGAATCAAACATGATGTGTTCATCAACTTCAGAGGAGAAGACATCCGCACTTCTTTTCTTAGCCATTTGCAAAAAGAGTTGCATTGTAACCATATCGATTTCTTTGTAGATGATCAAAAGCTGCACCCTGGAGATGAGATTTCATCCACTCTTCTTCAGGCCATTGAAGAGTCTTTGATTTCATTGGTCATCTTTTCAAAAAACTATGCTTCTTCAACTTGGTGCTTGAATGAACTTGTGAAAGTAATTGAATGCATGAAACAACATCAAAGGATTGTGATACCTGTTTTCTACAACGTTCTTCCCTCTGATGTGCGATATCAAAAGAATTCTTTTAAGGAGGCTTTTGATAGACACCAACACAAATTGAAGGGAAATACAATGAAGATGCAAAGTTGGAGATTTGCTTTAAAAGAAGCTGCTGATTTATCTGGATTTCATTATCCATCCAAATATCAAGATGAATCTAACTTCATTGAAGAAATTGTGAAAGATATTTCAGAGAAACTGTCATATGTTTTCTCAAGAGAACCCAATGGTCTTGTTGGAATTGATGACAGTATTAAGAGTATTGAATCATTATTGGCAATTGAATCAAGTGAAGTCCGAATCATAGGAATTTGGGGTATGGGAGGAATAGGTAAAACTACTATTGCTGAATTCCTATTTGACAAATATTCTTCACAATATGAAGGCAGTTGTATGTTGAAAAATATAAGAGAAGAATTACAAAAGTTTGGTGTGCCTTACTTATGTGAGAAACTTGTTTCTGACTTATTAGCCAAAGAAAGCCTTGTTTTGAAAGGATCATCCAAAGCAAGATCCACTTTTGTACAGAGCAAAGTTAAGTTGAGTCGAAAAAAAGCTTTCGTAGTGCTTGATGATATGGATACATTAGAGCAGTTTGAACATCTTGCTACACAACGGTTGGGACCGGGTAGTAGGATGATTGTGACTACCAGAGACAAGCATGTCCTTAGAAAGGTTCATGGAGTATACGAGGTCAAAGGCTTGAGCTTTGAAAATTCGTTTAAGCTTTTTTGTTTGAATGCTTTTGACAAATTCTCTCCTGAAGCCGGATATCAAGAGGTTTCGAAAATGGCAGTCAATTATGCAAATGGAATTCCATTGGCTTTAAAGGTTTTGGGTTCTTTTTTATATTCTAAGGCCATAGAAGAATGGGAAAGTGCTTTGGCAAAGCTCAGGATTTATCCTAACATAGACATTTTTAGTGTCTTAAAGTTGAGTTATGATGGGCTAGATGAATTTGAGAGGGACATATTCCTTGACATTGCATTTTTTTTCAAAGGAGAACATAAGGATGTTGTCTTACCATTTCTAGAATCATGTGGTTTTTTTCCTGCTATTGGCATAGTTAACCTTTCTCGTAAGGCTCTTATAACTATTTCAAAATATAATAAGATAGAAATGCATGACTTGATAGAACAAATGGGTCGAGAAATAGCTCGTCAAGAATCAATTGAAGACCCAGGAAGACGTAGCCGCATAAGTAACCACGAGGATATCTACAATGTGTTGAATGATAACAAGGGAACAGACTCAGTTGAGGGGATTATGTTGGATTTGTCTCAAATTAAGACAGATGTATATTTAAGTGCAGACACATTCAAAAAGATGCCTAATATAAGGTTTCTCAAATTTTACAACTTCTGGAGGCACAAAAAATCTGCGAATGTGTACGCTTCATCAACTCTCGAGTCATTTCCAAGCGAGCTAAGATACTTGGAGTGGAGTCGCTGCCCAATGAAATCTTTTCCGCCAACTTTCTGTGCTGAGAAGCTTGTCGAGATTTCTATGCCAGAAAGCCAAGTTTCTAAACTTTGGGATGGAGTTCAGGATCTTGTAAATTTAAAGAAGATTAACCTTAGTGTATGCAAGCGGCTAGTGGAGCTTCCAGATTTTACTTTGGCATCAAACCTTGAAGAAATATGTCTTGATGGTTGTGTAAGCTTATGTCAATTTCATCCATCCATTTTATCCATCCACAAGCTTGAAACCTTGAGTCTCAATTGTTGCAAAAAGTTGAAGAGCCTTAAAGGAAAGATTCATTTGAAGTCTCTTAAAAAAGTCCATGTTCTTTACTGCTCAAGCTTGAAGGATTTTTCAGTGTCATCAGAGGAATTAACAAGGTTGGATTTCAATGGGACAATAATTGATACGTTGCACTCGTCAGTTGGCCGTCTCAGCAAACTTGTAATGCTTGATCTCTGTAATGCAAGACTTGAAACTCTTCCGAACGAACTGTGTCTCTTAGTATCCCTGGAGGAGCTAAATCTTAAAGGATGCAAACAGTTGATTAATCTCCCTCCCAATATGAAAGCCTTATCGCGGTTACAGAATCTCAACTTAACAAATTGCTGCAGCCTTCAATCTTTACCGGAGCTTCCGCCGTCTATTATACATTTATGTGCCACCAACTGCACATTGCTTCAGAAATTATTCAATGCAAAGGTAGTATTCATCAGTTTAAATCTAATATCCATCTCATTTGAAAACTGCAAGAGTCTTGATGATGATTCATTCATAGAATATGTGCATGATACAATGATGGGAGTAGCAATCAGGGAGATATTGGGTGGGATGTTGCAATATATATCTAGCCGTTACTCTGGTGGTTGGAACAATGATGTGCACCCCGAATCCAACGGCCAGGTACTTTACCCCGGAAGCAAGGTTCCATCATGGTTCAAGTATCAGACAAGTGGGAATTCAGTAACTATCAACCTTGCAGATGAATCTTGGAAGCAACCACTGGGTTTTATTTTGTGTTGTGTTGTTTATCATATTCCCTCTGTGACAGAGAATTCTCGTACTAGCTCTGTTGGTTCTGCGAAACGGCCTCCCAGAATCAGCTGTAAATCCGGTTCATGGCAAAGCAAACAGTTTGCTAAGACGAGTAGTTGGAGCTCAGATCATGTTTGTATATGGTTTGGAGAAGTTGGTTATCACCATCGATTTCGTTACATGAATGCTACATTTAAATTCAAATCTGAACCTTATAAGGAGGATTGGGAGTTCATAGAAGGAAAGTTCTTTTATGATAGATACCAGAATGGATGCCCCAATCATATTGATCAAAGAGTCTTCACTCTTGACCAAGTTAAAACACAGCTGATTCACAGGATGGAAGAACAGCAAAAAGAATTATTGAGATCATGTGATTGCATTTGCAAGATGCAAGAAGAACAAGAAGAAGATGAAGAAGTAGAAGAAGGAGAATTATTGTCCCAAGACTCTTATCCCTTTAATGATGATATCTTGTTTGGAGATTCATATCAAATGTTGGTGATTCCGAAAGTGCCTCAGAGCTTCGATGAAGAAGAAAACCAAGGCGAACAAGTTCGAAGAAACAAGTCTCCATGGCGGCGTTTGCTAACCAAAATATTCAGAAAATATAAAGGTGAGAACATCTTTGATTGGTTTATGACTTGGATAGAAATCACTTCTTTATTGGTGAAGGTGGAGAAATTATTACATTCTCCACTGGATAGTTGA 3555 0.3752 MASSSSSSLLNVPRIKHDVFINFRGEDIRTSFLSHLQKELHCNHIDFFVDDQKLHPGDEISSTLLQAIEESLISLVIFSKNYASSTWCLNELVKVIECMKQHQRIVIPVFYNVLPSDVRYQKNSFKEAFDRHQHKLKGNTMKMQSWRFALKEAADLSGFHYPSKYQDESNFIEEIVKDISEKLSYVFSREPNGLVGIDDSIKSIESLLAIESSEVRIIGIWGMGGIGKTTIAEFLFDKYSSQYEGSCMLKNIREELQKFGVPYLCEKLVSDLLAKESLVLKGSSKARSTFVQSKVKLSRKKAFVVLDDMDTLEQFEHLATQRLGPGSRMIVTTRDKHVLRKVHGVYEVKGLSFENSFKLFCLNAFDKFSPEAGYQEVSKMAVNYANGIPLALKVLGSFLYSKAIEEWESALAKLRIYPNIDIFSVLKLSYDGLDEFERDIFLDIAFFFKGEHKDVVLPFLESCGFFPAIGIVNLSRKALITISKYNKIEMHDLIEQMGREIARQESIEDPGRRSRISNHEDIYNVLNDNKGTDSVEGIMLDLSQIKTDVYLSADTFKKMPNIRFLKFYNFWRHKKSANVYASSTLESFPSELRYLEWSRCPMKSFPPTFCAEKLVEISMPESQVSKLWDGVQDLVNLKKINLSVCKRLVELPDFTLASNLEEICLDGCVSLCQFHPSILSIHKLETLSLNCCKKLKSLKGKIHLKSLKKVHVLYCSSLKDFSVSSEELTRLDFNGTIIDTLHSSVGRLSKLVMLDLCNARLETLPNELCLLVSLEELNLKGCKQLINLPPNMKALSRLQNLNLTNCCSLQSLPELPPSIIHLCATNCTLLQKLFNAKVVFISLNLISISFENCKSLDDDSFIEYVHDTMMGVAIREILGGMLQYISSRYSGGWNNDVHPESNGQVLYPGSKVPSWFKYQTSGNSVTINLADESWKQPLGFILCCVVYHIPSVTENSRTSSVGSAKRPPRISCKSGSWQSKQFAKTSSWSSDHVCIWFGEVGYHHRFRYMNATFKFKSEPYKEDWEFIEGKFFYDRYQNGCPNHIDQRVFTLDQVKTQLIHRMEEQQKELLRSCDCICKMQEEQEEDEEVEEGELLSQDSYPFNDDILFGDSYQMLVIPKVPQSFDEEENQGEQVRRNKSPWRRLLTKIFRKYKGENIFDWFMTWIEITSLLVKVEKLLHSPLDS 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211904g00004 1184 Gene3D - 184 347 IPR027417 -
Stsc211904g00004 1184 Gene3D Ribonuclease Inhibitor 703 842 IPR032675 -
Stsc211904g00004 1184 Gene3D Ribonuclease Inhibitor 526 702 IPR032675 -
Stsc211904g00004 1184 Pfam Leucine Rich Repeat 613 632 IPR011713 -
Stsc211904g00004 1184 SUPERFAMILY L domain-like 490 855 - -
Stsc211904g00004 1184 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 722 IPR044974 GO:0006952
Stsc211904g00004 1184 Pfam TIR domain 16 188 IPR000157 GO:0007165
Stsc211904g00004 1184 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Stsc211904g00004 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 444 IPR027417 -
Stsc211904g00004 1184 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 159 IPR035897 -
Stsc211904g00004 1184 PRINTS Disease resistance protein signature 217 232 - -
Stsc211904g00004 1184 PRINTS Disease resistance protein signature 296 310 - -
Stsc211904g00004 1184 PRINTS Disease resistance protein signature 385 399 - -
Stsc211904g00004 1184 PRINTS Disease resistance protein signature 632 648 - -
Stsc211904g00004 1184 Gene3D - 351 434 IPR042197 -
Stsc211904g00004 1184 SMART till_3 16 156 IPR000157 GO:0007165
Stsc211904g00004 1184 Pfam C-JID domain 907 1002 IPR045344 -
Stsc211904g00004 1184 Pfam NB-ARC domain 205 415 IPR002182 GO:0043531
Stsc211904g00004 1184 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Stsc211904g00004 1184 Gene3D - 12 183 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211904g00004 Stsc-Chr211904 33922 38053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211904g00004 17 824 WRKY Transcription Factor Family AT4G12020 35.115 1.03e-111 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211904g00004 - - ahf:112728432 1534.62