Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211904g00003 ATGGCTTCCTCATCTTCTTCTTCTTCCTCTTTATTGGATGTTCCCATCAAACATGATGTCTTCATCAGCTTCAGAGGGGAAGACATTCGCACTAATTTACTTGGCCATTTGCGAAAAGAACTGCACCGTAACTATATCGATTTCTTCATAGATGATGTAAAAATTCACCCTGGAGATGAGATTTCATCCACACTTCTTCATGCCATTGAAGGGTCTTTGATTTCATTGGTCATCTTTTCGGAAAACTATGCTTCTTCAGCTTGGTGCTTGAATGAACTTGTGAAAGTAATTGAATGCATGAAACAACATCAAAGGATTGTGATACCTGTTTTCTACAACGTTCTTCCCTCTGATGTGCGATATCAGAAAAATTCTTTTAAGGAGGCTTTTGATAAACACCAACACAGATTCAAGGGAGACACGGCCAAGGTGCAAAGTTGGAGATCTGCTTTAAAAGAAGCTTCTAATTTATCTGGATTTCATTATCCCTCCAAATATCTAGATGAATCTAAATTTATTGAAGAAATTGTGAAAGATATTTCGGAGAAATTGTCAAATATTTTCTCAAGAGAATCCAACGGTCTTGTTGGAATTGATGATAGTTTGAGAACTATTGAATCATTATTGGAAATTGAATCAAGCGAAGTTCGAATCATAGGGATTTGGGGGATGGGAGGAATAGGTAAAACTACTATTGCCGAATTCTTATTTGACAAATATTCTTCCCAATATGAAGGCAGTTGTATGCTGAAAAATGTAAGAGAAGAGTCACAAAAGTATGGTGTGCCTTATTTATGTGAGAAACTTATCTCTGAGTTATTAGTTGGAGAAAGTCTTGATTTCAAAGGATCATCCAAAGCTAGATCCACTTTTGCCCAGAGAATGTTAACTAGAAAAAAAGTTTTCATAGTGCTTGATGATATGGATACATCAGAGGAGTTTGAACACCTTGCTGCACAATGGTTGGGACCAGGTAGTAGGATAATTGTAACTACCAGAGACAAGCATGTCCTTAGAAAGGTTCAAGGAATATACGAGGTCAAAGGCTTGAGCTATGTAAATTCCTTTAAGCTTTTTTGCTTGAATGCTTTTGAGAAAGTCTATCCTGAAGCTGGATATGAAGAGGTTTCAGAAATGGCAGTGAATTATGCAAATGGCATTCCGTTGGCTTTAAAAGTTTTGGGTTCTCTTTTATACTCTAAAGCCATAGAAGAATGGGGAAGTGCCTTAGCAAAACTCAAGATTTATCCCAACAAAGACATTTTTAATGTTTTAAAATTGAGTTATGATGGGCTAGATGAGTTAGAGAAGGAAATATTCCTTGACATTGTGTTTTTTTTCAAAGGAGAAAAGAAGGATGTTGTCATACCATTTCTAGAAGCGTGTGGTTTTTTCCCTGCTGTTGGCATAGCCAATCTTTCTCGTAAAGCTCTCATAACTATTTCAGAAGATAATGAAATAGAAATGCATGACTTGATAGAACAAATGGGTCGAGAAATAGTTCGTCGAGAATCAATTAAAGAGCCAGGAAGACGTAGCCGCTTAAGTAACTCTGAGGATGTCTACAAGGTATTGAATAATAATAAGGGAACAGACTCAGTTGAAGGCATTGTGTTGGATTTGTATAAAATTAACAGAGATCTACATTTAGATGCTGACACTTTCAAAAAGATGCCTAATATAAGGTTTCTCAAATTTTACTATTCCTGGGGGCATGAAAAGTCAGCGAATGTTTCTGTTTCTTCAACTCTCGAGACATTTCCAAATGAACTAAGATACTTGGAGTGGAGTGGCTATCCTTTGAAGTCTCTTCCACCAAGTTTTTGTGCTGAGAAGCTTGTTGAGCTTTCTATGCCAGATAGCCAAGTTTCTAAACTCTGGGATGGAGTTCAGGATCTTGTAAATTTAAAGAGGATTAACCTTGAGGGATGCAAGCAGCTAGTGGAGCTTCCAGATTTTACTCAGGCATCAAACCTTAAAAAGATACAGCTCAATGATTGTGTAAGCTTGTGTCAACTTCATCCATCCATGTTATCCATCCACAATCTGGAAACCTTGAGTGTTTGGGGTTGCAAAGCACTTAAGAGTCTTAAAAGCAAGATCCATCTGAAATCTCTTCAATATCTCGATGTTCGTTGCTGCTCAAGCCTAAATGAATTTTCAGTATCATCAGAGGAATTAACAAGTTTGAATTTCAATGGGACAATAATTGACTCGTTGCACTCATCTATTAGCCGTCTCAGCAAACTTGTACTGTTTGATCTGAGTAATGTGAGACTCGAAATTCTCCCAAACGAACTGTGTCTCTTAGTATCCCTTGAGGTAATAAATCTTAAAGGCTGCAAACAGTTGATTGAACTCCCTCATGATATGAAAGCCTTGTCGCGGTTAAAAGAACTCAACTTAGACGATTGCTTCAGCCTTCGATTCTTACCGGAGCTTCCAGCATCTATTATACATCTATCAGCCACAAACTGCACATCGCTGGAGAAATTATTCAACATAAAGACAGTATTCAGTTTAAATCTAAAGTCCTTCTCATTTGAAAATTGCGAGAGGCTTGATGAACACTCCATCTTCGAATACGTGCAGCTTACAATGATGGGAGTAGCAATTAGAGACATATTGGGTGAGATGCTGCAATACAAATTTGAACCTCACGCTGATGATGATGATATTACATTCTTCCCTCAATCCAACAGTCAAGTATTTTATCCCGGAATCAAGGTTCCACCATGGTTCACATACCAGACAAGAAGGGCTTTGATAACAATTGACCTTCCTGGATATCAATCATTGAACCCGCTAGTGGGTTTCATTCTTTGTTGTGTTGTTGATCATATTCCTTCTCGTAGACGGCCTCTTACCACTAGTCCTTGGCATTCTGCAGAAAAGCCTCCCATAATCAGTTGTCAATTTGGTAACTCGGAATACAGCAAACGGTTTGCTGAAACAACTCAATGGAACTCAGATCTTGTTTGCATATGGTTTACACATGCTTCTGGTGATTGTCAATGGCTTGGCAAAAATACTACATTTAAATTCAAGGCTGAAACTCTATATGCAGATTATCTACCTTCATCTTCATCTTCATACCGAGAACGGCGTATCCCATATTCATGGTGTGTCTTGGATGAAAGGCAGGTCATAGGGTGCGGGGTTCAACCAGTATATGCCTCAGACATCTTTGATATCTTTCCAAATGTGGATCCACACTTCCAGTTTTTTAAAGATAGACCCAGCTACGAGAGGGAGGGTGGATTTTACGGGAAGAGGAGGGATTTTCAATTGGTTTATACTCTTGACCAAGTCAAGACATGCACGATTCAGAAGATGGAAGAAGAGCAACAAAATTTAAAGCTCCAAGATGTTCGAAGAATGAGGTTTTGGTTACCTTACACGGCGGGCGAGGTGTCCGAAAGCGATTCAATCCCAACAAAACCGACTGACCGAATAAAAGAAATTGAAAACCGAAAACAAAGAAAAACCAAAAAATTCAATGCATGCAGTAGTTTGAATTCGGTTCTACCATCGGGATCAAAGAAAGTACCTCAGAGCTTAGATGAAGAAGAAAAGCAAGGCGTTCAAAGAAACAATTCTATTCGGTTACCTTCATGGCGGCGCTTGGCAACCAAAATATTTAAAAGTTGCCGAAAATTTTAA 3663 0.3841 MASSSSSSSSLLDVPIKHDVFISFRGEDIRTNLLGHLRKELHRNYIDFFIDDVKIHPGDEISSTLLHAIEGSLISLVIFSENYASSAWCLNELVKVIECMKQHQRIVIPVFYNVLPSDVRYQKNSFKEAFDKHQHRFKGDTAKVQSWRSALKEASNLSGFHYPSKYLDESKFIEEIVKDISEKLSNIFSRESNGLVGIDDSLRTIESLLEIESSEVRIIGIWGMGGIGKTTIAEFLFDKYSSQYEGSCMLKNVREESQKYGVPYLCEKLISELLVGESLDFKGSSKARSTFAQRMLTRKKVFIVLDDMDTSEEFEHLAAQWLGPGSRIIVTTRDKHVLRKVQGIYEVKGLSYVNSFKLFCLNAFEKVYPEAGYEEVSEMAVNYANGIPLALKVLGSLLYSKAIEEWGSALAKLKIYPNKDIFNVLKLSYDGLDELEKEIFLDIVFFFKGEKKDVVIPFLEACGFFPAVGIANLSRKALITISEDNEIEMHDLIEQMGREIVRRESIKEPGRRSRLSNSEDVYKVLNNNKGTDSVEGIVLDLYKINRDLHLDADTFKKMPNIRFLKFYYSWGHEKSANVSVSSTLETFPNELRYLEWSGYPLKSLPPSFCAEKLVELSMPDSQVSKLWDGVQDLVNLKRINLEGCKQLVELPDFTQASNLKKIQLNDCVSLCQLHPSMLSIHNLETLSVWGCKALKSLKSKIHLKSLQYLDVRCCSSLNEFSVSSEELTSLNFNGTIIDSLHSSISRLSKLVLFDLSNVRLEILPNELCLLVSLEVINLKGCKQLIELPHDMKALSRLKELNLDDCFSLRFLPELPASIIHLSATNCTSLEKLFNIKTVFSLNLKSFSFENCERLDEHSIFEYVQLTMMGVAIRDILGEMLQYKFEPHADDDDITFFPQSNSQVFYPGIKVPPWFTYQTRRALITIDLPGYQSLNPLVGFILCCVVDHIPSRRRPLTTSPWHSAEKPPIISCQFGNSEYSKRFAETTQWNSDLVCIWFTHASGDCQWLGKNTTFKFKAETLYADYLPSSSSSYRERRIPYSWCVLDERQVIGCGVQPVYASDIFDIFPNVDPHFQFFKDRPSYEREGGFYGKRRDFQLVYTLDQVKTCTIQKMEEEQQNLKLQDVRRMRFWLPYTAGEVSESDSIPTKPTDRIKEIENRKQRKTKKFNACSSLNSVLPSGSKKVPQSLDEEEKQGVQRNNSIRLPSWRRLATKIFKSCRKF 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211904g00003 1220 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 723 IPR044974 GO:0006952
Stsc211904g00003 1220 MobiDBLite consensus disorder prediction 1175 1196 - -
Stsc211904g00003 1220 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Stsc211904g00003 1220 Gene3D - 184 346 IPR027417 -
Stsc211904g00003 1220 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc211904g00003 1220 Pfam TIR domain 17 194 IPR000157 GO:0007165
Stsc211904g00003 1220 Pfam NB-ARC domain 204 425 IPR002182 GO:0043531
Stsc211904g00003 1220 Pfam C-JID domain 906 1061 IPR045344 -
Stsc211904g00003 1220 FunFam Disease resistance protein RPS4 531 725 - -
Stsc211904g00003 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 443 IPR027417 -
Stsc211904g00003 1220 Gene3D - 15 183 IPR035897 -
Stsc211904g00003 1220 SUPERFAMILY L domain-like 489 855 - -
Stsc211904g00003 1220 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc211904g00003 1220 Pfam Leucine Rich Repeat 612 631 IPR011713 -
Stsc211904g00003 1220 Gene3D Ribonuclease Inhibitor 525 701 IPR032675 -
Stsc211904g00003 1220 Gene3D Ribonuclease Inhibitor 702 859 IPR032675 -
Stsc211904g00003 1220 PRINTS Disease resistance protein signature 384 398 - -
Stsc211904g00003 1220 PRINTS Disease resistance protein signature 218 233 - -
Stsc211904g00003 1220 PRINTS Disease resistance protein signature 295 309 - -
Stsc211904g00003 1220 PRINTS Disease resistance protein signature 701 717 - -
Stsc211904g00003 1220 SMART till_3 17 157 IPR000157 GO:0007165
Stsc211904g00003 1220 Gene3D - 350 433 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211904g00003 Stsc-Chr211904 20738 24874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211904g00003 18 823 WRKY Transcription Factor Family AT4G12020 34.634 5.70e-113 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211904g00003 - - ahf:112728432 1695.25