Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211904g00001 ATGGCTGCTTCTTCTTCTTCCTCCTCTTTATTGAATGATTCCAGAATCAAACACGATTTGTTTGTCAGTTTCAGAGGAGAAGATATCCGCACTTCTTTCCTTAGCCATTTGCGAAAAGAGTTGCACCGTAACTCTATCGATTTCTTCCTAGATGATGAAAAAATTCACCCTGGAGATGAGGTTTCATCCACACTTCTTCAAGCCATTGAAGAGTCTTTGATTTCATTGGTCATCTTTTCGGAAAACTATGCTTCTTCAACTTGGTGCTTGAATGAACTTGTAAAAGTAGTTGAATGCATGAAACAACATCAAAGGATTCTCATACCTGTTTTCTACAACGTTCCTCCCTCTGATGTGCGATATCAGAATAACTCTTTCAAGAAGGCCTTTGATGAACACCAGAAGAAATTGGAGAGAAATATGAAGGTGCAAAGTTGGAGATTTGCTTTAAAGGAAGCTGCTGATTTATCTGGATTTCATTATCCCTCCAAATATCGTTGTATGTTAAAAAATGTAAGAGAAGAATCACAAAAGTCTGGTGTGCCCCATTTATTTGAGAAACTTGTTTCTGAGTTATTAGGGGGAGAATGTCTTCATTTGAAAGGATCATCCAAAGCAAAATCCAGTTTTGTCCAGCGAAAGTTAAGTCGAAAAAAGGTTTTCATAGTGCTTGATGATATGGATACATTAGAGCAGTTTGAACACCTTGCTATACAGTGCTTGGGACCAGGTAGTAGGATCATTATAACTGCCAGAGACAAGGCTGTCCTTAGAAAGGTTCATGGAATATATGAGGTCAAAGGCTTGAGCTCTGAAGCTTCCCTTAAGCTTTTTTGCTTGAATGCCTTTGAGAAAGTCTACCCTGAAGTTGGATATGAAGAGGTTTCAAATATAGCAGTCAAGTATGCAAAAGGCGTCCCATTGACTTTAAAAGTTTTGGGTTCTTTTTTAAATTCTAAACCAATAGAAGAATGGGAGAGTGCTTTGGCAAAACTCAAGATTTATCCTAACATAGACATTTTTAATGTCTTAAAATTGAGTTACGATGGGCTAGATGACTTAGAAAAGGAAATATTCCTCGACATTGTATTTTTCTTCAAAGGAGAAGATAAGGATGTTGTCATACCATTTCTAGAATCCTGTGGTTTCTTCTCTGCTATTGGCATAGGCAATCTTTCACGTAAAGCTCTTATAACTATTTCAAAATATAATAGAATAGAAATGCATGACTTGATAGAACAAATGGGTCGAGAAATAGTTCGCCGAGAATCAATTAAAGACCCAGGAAGACGGAGCCGCTTAAGTAACCATGAGGAAGTTTTCAATGTATTGAAAAACAATAAGGGAACAGACTCAGTTGAAGGCATTATGTTGGACTTGTCTCGAATTAAGAGAGATCTATATTTAGATGCTGACACTTTTAAAAAGATGCCTAATATAAGGTTTCTCAAATTTTATAATTCATGGAGGTACAAAAAATCAGCTGATGTGTATGTTTCCTCAACTCTGGAGTCATTTCCAAATGAGCTAAGATACTTGGAGTGGAGTGGCTGCCCTTTGAAGTCTCTTCCACCAACTTTTTGTGCTGAGAAGCTTGTTGAGCTTTCTATGCCAGATAGCCGAGTTTCTAAACTTTGGGATGGAGTTCAGGATCTTGTAAATTTGAAGAAGATTAACCTTCGTGCATGCAAGCAGCTAGTGGAGCTTCCAGATTTTACCCGGGCATCAAACCTTGAAGAAATACGTCTCGATGTTTGTTTAAGGTTATGTCAACTTCATCCATCCATTTTATCCATGCACAAGCTTAAAATCTTGAGCCTTTATTGCTGCAAAAAGTTAAAGAGCCTTAAAGGAAAGATTCATTTGAAATCTCTTAAAAGAATCAATCTTCTATGCTGCTCAAGCTTGAAGGAATTTTCATTGTCATCAGAGGAATTAACAAGGTTGAATTTCATTGGGACAATGATTGATAAGTTGCACCCATCAGTTGGCCGTCTCAGCAAACTTGTAAAGTTTGATCTCTCTAATGCGAGACTTAAAACTCTTCCAAACGAACTGTGCCTCTTAGTCTCCCTTGAGGAACTAAATCTTAAAGGTTGCAAAGAGTTAATTGAACTCCCTTCTAATATGAAAGCCTTATCGCGGTCACAGAATCTCAAGTTAACAGATTGCTGCAGCCTTCGATCTTTACCGGAGCTTCCGCCATCTATTATACATTTATGTGCCACCAACTGTACATCGCTGGAGAAGTTATTCAATGCAAAGGCAGTGTTCAGTTTAAATCTAGTGTCTATCTCATTTGAAAACTGCAAGAGGCTTGATGATGAATCATTTTTAGAATATGTGCATCAACCAATGATGGGAGTAGCAATCAGAGATATAGTGGGTGGGATGCTGCAATATACATTTAGTCTGAATGATAATGGCCAAGTTATTTATCCCGGAAGCGAGGTTCAATCATGGTTCAAATATCAGACAAGAGGGTCTTCAGTAACTATTAACTTTGAGGATGAATCTTGTAACCAATTAGTGGGTTTCGTTTTGTGCTGCGTTGTTCGTCATGCTCCTTATAGAAAAAAGGATTTTTCTACAAAACGGCCTTCCAGAATCAGTTGTCAATTCGGTTCATGGTATAGCAAACAATTTGCTAGGACTAGCAGTTGGAGCTCAGATCATGTTTGTATATGGTTTGGGAAAGTTGGTTGTCACCATCACTTTCGTGACAACAATGTTACATTTAAATTCAAATGTGAACCTTATAAGGAGGATGGGGAGTTCATAGATGGAAAGCTACTCTATAACTATGAATGGGAGGTGATAGGTTGCGGGGTTTGCCCAGTATATGCCTCGGACATCCTCCATGTCTTTCAAAATGTGAATCCGGATTTGCAGTTCTTTTATGATAGATACAACAATGGATGCCGGAATCATATTGATCAAAGAGTTTTCACTCTTGACCAAGTGAAAACAAGGGTGATTCACAAGATCAAAGAACAACAAAAAGAATCATCACTGAGAACCTTTTGTTGGATTTGCAAGGAGGAATTTTGGCTCAAAGAGAGTTGGCCTGGAAATGATATTGATGAATTGGATTTCACTCTTGACGAAGAACTTCAAATGGAATTATCAGAAGATGAAGAAGAACCAGAAAGGATCTTGTTTGGAGATTTATGTCTCTTTGATGAGATCTCTGTTGAGTCGAGCAAGGTTTTCAAAATCCCTGGATCAAAGAAAGTACCTCAGAGCTTCAATAATGAAGATGAAAACCAAGGCGTTCAAAGAAAGAAGTTTCCTCGGTTACCTTCGTGGCCGCGTTTGGAAACAAGAAACTTTAAACATCGCCGAATATGTTAA 3354 0.3801 MAASSSSSSLLNDSRIKHDLFVSFRGEDIRTSFLSHLRKELHRNSIDFFLDDEKIHPGDEVSSTLLQAIEESLISLVIFSENYASSTWCLNELVKVVECMKQHQRILIPVFYNVPPSDVRYQNNSFKKAFDEHQKKLERNMKVQSWRFALKEAADLSGFHYPSKYRCMLKNVREESQKSGVPHLFEKLVSELLGGECLHLKGSSKAKSSFVQRKLSRKKVFIVLDDMDTLEQFEHLAIQCLGPGSRIIITARDKAVLRKVHGIYEVKGLSSEASLKLFCLNAFEKVYPEVGYEEVSNIAVKYAKGVPLTLKVLGSFLNSKPIEEWESALAKLKIYPNIDIFNVLKLSYDGLDDLEKEIFLDIVFFFKGEDKDVVIPFLESCGFFSAIGIGNLSRKALITISKYNRIEMHDLIEQMGREIVRRESIKDPGRRSRLSNHEEVFNVLKNNKGTDSVEGIMLDLSRIKRDLYLDADTFKKMPNIRFLKFYNSWRYKKSADVYVSSTLESFPNELRYLEWSGCPLKSLPPTFCAEKLVELSMPDSRVSKLWDGVQDLVNLKKINLRACKQLVELPDFTRASNLEEIRLDVCLRLCQLHPSILSMHKLKILSLYCCKKLKSLKGKIHLKSLKRINLLCCSSLKEFSLSSEELTRLNFIGTMIDKLHPSVGRLSKLVKFDLSNARLKTLPNELCLLVSLEELNLKGCKELIELPSNMKALSRSQNLKLTDCCSLRSLPELPPSIIHLCATNCTSLEKLFNAKAVFSLNLVSISFENCKRLDDESFLEYVHQPMMGVAIRDIVGGMLQYTFSLNDNGQVIYPGSEVQSWFKYQTRGSSVTINFEDESCNQLVGFVLCCVVRHAPYRKKDFSTKRPSRISCQFGSWYSKQFARTSSWSSDHVCIWFGKVGCHHHFRDNNVTFKFKCEPYKEDGEFIDGKLLYNYEWEVIGCGVCPVYASDILHVFQNVNPDLQFFYDRYNNGCRNHIDQRVFTLDQVKTRVIHKIKEQQKESSLRTFCWICKEEFWLKESWPGNDIDELDFTLDEELQMELSEDEEEPERILFGDLCLFDEISVESSKVFKIPGSKKVPQSFNNEDENQGVQRKKFPRLPSWPRLETRNFKHRRIC 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211904g00001 1117 SUPERFAMILY L domain-like 466 773 - -
Stsc211904g00001 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 362 IPR027417 -
Stsc211904g00001 1117 FunFam Disease resistance protein RPS4 450 644 - -
Stsc211904g00001 1117 Gene3D - 1 153 IPR035897 -
Stsc211904g00001 1117 SMART till_3 17 156 IPR000157 GO:0007165
Stsc211904g00001 1117 SUPERFAMILY "Winged helix" DNA-binding domain 339 444 IPR036390 -
Stsc211904g00001 1117 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 179 - -
Stsc211904g00001 1117 Gene3D - 154 265 IPR027417 -
Stsc211904g00001 1117 Gene3D Ribonuclease Inhibitor 389 788 IPR032675 -
Stsc211904g00001 1117 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 165 641 IPR044974 GO:0006952
Stsc211904g00001 1117 Pfam Leucine Rich Repeat 531 550 IPR011713 -
Stsc211904g00001 1117 Pfam C-JID domain 813 951 IPR045344 -
Stsc211904g00001 1117 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 159 IPR035897 -
Stsc211904g00001 1117 Pfam TIR domain 17 176 IPR000157 GO:0007165
Stsc211904g00001 1117 ProSiteProfiles TIR domain profile. 16 192 IPR000157 GO:0007165
Stsc211904g00001 1117 Gene3D - 268 352 IPR042197 -
Stsc211904g00001 1117 Pfam NB-ARC domain 176 333 IPR002182 GO:0043531
Stsc211904g00001 1117 PRINTS Disease resistance protein signature 214 228 - -
Stsc211904g00001 1117 PRINTS Disease resistance protein signature 550 566 - -
Stsc211904g00001 1117 PRINTS Disease resistance protein signature 303 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211904g00001 Stsc-Chr211904 1570 6832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211904g00001 168 742 WRKY Transcription Factor Family AT4G12020 38.031 3.88e-85 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211904g00001 - - ahf:112744694 1163.29