Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211903g00002 ATGGAGAAAGCAGAAGGGGAGATTAGTTTAGAGAGTGATGTTATTGCATCTAATCCACCCGCTGGCACGGTTCAAGGTTCCATTCAAAGTAATTCTGAGAAAGAGTTAGATTCAGAGAAGAGAAAGGCAAAAGATGAAGCGAAAAACAAAATCCCCTTCTACAAGCTCTTTTCTTTTGCAGACCCTTTGGATTATGCATTGCTGATTGTGGGGACAATCGGTGCGGTTGGAAATGGAATGGCGAATCCCTTGATGACAGTTGTTTTCGGGAATTTGATTGATGCATTTGGAGGGACCTCAAACTCCCAAAAAGTTGTTCATGATGTTTCCAAGCTTGCTCTAAAGTTTGTATACCTGGCTCTGGGTTCCTTTGCAGGATCTTTTCTTCAGGTTTCTTGCTGGATTGTCTCCGGGGAGAGACAGTCTGCAAGAATAAGAAGCTTATACCTAAAAACAATTCTGAGGCAAGATGCCAGCTTCTTCGATACAGAAACCAACACCGGCGAGGTTGTTGGAAGGATGTCAAGTGACACTATGCTAATTCGCGAAGCCATGGGTGAGAAGGTAGGACAGTGTATACAGTTAGTGGCATCATTTGTTGGAAGTTTCATCATAGCCTTCATCAAGGGATGGCTTCTTACTCTTGTCTTGATGTCCTGTATTCCGCCTCTTGTTCTTGCTAGCGCCGTGATGAGTATCGTTATTGCGAAAGTGACGACGCGAAGACAAGTAGCATATTCTGCAGCAGCATCTACAGCAGAGGAGACAATTAGTTCAATCAGAACTGTTGCATCGTTCACCGGCGAGAAGCAAGCCATGGCGAAGTATAATCAGTCGTTGTTAAAAGCTTATAAGACCGGAGTGCAAGAAGGAGTGGCTTCTGGACTGGGATTTGGTTCGGTTCTTCTGATTGCTTTCTGCACTTATGCTTTGGCCATATGGTATGGCGGGAAATTGATTATAGAGAAAGATTATACGGCGGGGAAAATTATCACTATAATTTTTTCAATTTTGATGGGATCACATTCTCTTGGACAGGCATCTCCTAGCATGAGTTCTCTTGCAGCAGGACAAGTCGCAGCTTATAAGATGTTTGAAACGATCAGTAGGCGACCTGATATCGATGCTTACGACACAACAGGACGAAAGCTTGATGATATTCGCGGTGATATTGAACTGCGAGAAGTTCGCTTCAGTTATCCGTCGAGGCCGGACGAGACTATATTCAACCGATTCTCTTTGTCCATACCAAGTGGCACAACTGTGGCTTTGGTAGGGCAAAGTGGGAGTGGAAAATCAACGGTTATTAGCTTGATAGAGAGGTTTTATGATCCACAAGCTGGCGAAGACGGTGCGACTGATGAAGAAATCAAAGAAGCAGTAGATATTGCAAATGCTTCTAAGTTCATTGACATGCTTCCACAGGGACTGGATACAATGATTGGAGAACACGGAACTCAACTGTCCGGGGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCCATTTTGAAAGATCCAAGAATTCTACTGCTTGATGAAGCTACAAGTGCACTTGATGCTGAATCTGAGAAAACAGTGCAGGAGGCTCTTGACAAAATCATGATAAATCGAACTACTGTTATTGTTGCTCATCGCTTAAGCACTGTCAGAAATGCTGCCACTATAGCTGTAATTCATCAAGGAAAAATAGTAGAAAAAGGTTCACATTCTGAGCTCATTAAAGATCCTGATGGAGCCTACAGCCAACTAAACAGATTGCAAGAGACTTACAGTGAGACGGAACACAATTTTTCTGTTGAAACAGAAAACCTTGAATCTACTACAATTTCTTCAAGGCATTCAAGTGAGCGGTTTTCTTTCAGAAAATCCATAACCCAAGTTTCTAGCGTTGGTTCGTTCTCATCGCCTACTAAGACTGGCGTCGCCGGCAAAGAAGACAACAAAGTTACTCTGTCAGCAGACACAAACTCAGAACAACCACCGAAAATACCGATCCGTCGCTTAGCTAAACTAAACAAGCCTGAGATCCCAGTCTTAGTATTAGGCACTATAGCTGCAGTGGCCAATGGCATCATATTACCCTTTTTCGGGTTCATGGTTTCGAAAATGGTCAACATTTTCTTCGAGCCGGCGGATGAACTTCGCAATGATTCAAGAACATGGGCGTACGTCTTCATCGCACTTGGTGTGTCATCGTCCTTTATCACTCCCTTGAGGTCCTACTTCTTTTCGGTTGCTGGTGAAAAGTTGGTAAAGCGAATGAGGCTAATGTGTTTCGAGAAAATGATCAACATGGAAGTTAGTTGGTTCGATGAAGCTGAGAATTCAAGTGGCGCACTTGGAGCAAGGCTGTCCACTGATGCAGCTTCTATTCGAGCTTTGGTCGGCGATGCGCTCGGATTAATGGTTCAGAACATAGCTACTGCTGTTGCAGGCGTGGCGATTGCATTCCAAGCAAACTGGCAACTATCTCTTATAATTCTTGTATTGCTGCCTATATTAGCACTAAATGGAATTCTTCAGCTCAAGTTCTTACAAGGATTCACTGCAGATGGAAAGAAATTATACGAGGAAGCAAGTCAAGTGGCAACTGATGCTGTAAGCAGCAATAGGACTGTTGCATCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTGTACAAGAAGAAATGTGAGGCACCGATTAAGGCAGGGATAAAGCAAGGGATAATAAGTGGAGTTGGTTTTGGGTTATCATTCTTGTTCCTGTTTTCAGTGTATGCATGCAGTTTCTACGCTGGGGCTAAGCTTGTAGGTGATGGTAAAGCCTCTTTCTCAGATGTTTTCCGCGTCTTTTTTGCCCTGAATATGGCTGCTGTGGGGATGTCTCTAACTAGTACCTTGGCCCCTGATTCAGCTAAAGCTAAAAACGCTGCTGCATCTGTATTGGCCATTATTGACAGAAAATCGAAAGTAGACCCCAATGATGACAATGGGTTGATTCTAGAAAACTTGAAGGGAGAAGTAGAGTTTCACCATGTCACTTTCAAGTACCCTACAAGACCTGATGTTCAAATATTTAAAGATCTTTGCTTGACCATTTATTCTGGCAAGACGGTTGCACTGGTTGGTGAAAGTGGAAGTGGGAAATCAACTGTGATATCATTGTTACAAAGATTTTACGACCCAGATTCAGGTCATATAACACTTGATGGAATAGATATCCAGAAAATTCAAGTTACATGGTTAAGGCAACAAATGGGCTTGGTAAGCCAAGAACCTATTTTGTTTAATGACACAATCAGAGGCAACATTGCTTACGGAAAGGGAGGAAAAGATGCAACAGAGGCAGAGATTATAGCTGCAGCAGAGATGGCAAATGCCCACAAGTTCATCAGTAGTTTGCAGCAGGGTTATGATACGAATGTGGGGGAAAGAGGATCAAAACTATCTGGTGGACAGAAGCAGCGTGTGGCAATTGCAAGAGCAATAGTAAAGAATCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCCCTTGATGCAGAGTCTGAAAAGGTGGTTCAAGATGCACTAGATCGAGTAATGGTGGAACGGACCACAATCATAGTAGCTCATAGGTTATCCACTATTAAGAGTGCAGATTTAATTGCAGTGGTTAAGAATGGGGTCATTGTAGAAAAAGGAAACCATGAAACATTGATCAACAATGGTGGCAATTATGCTTCTTTGGTTGCATTGCACACAAGTACATCATAA 3735 0.4295 MEKAEGEISLESDVIASNPPAGTVQGSIQSNSEKELDSEKRKAKDEAKNKIPFYKLFSFADPLDYALLIVGTIGAVGNGMANPLMTVVFGNLIDAFGGTSNSQKVVHDVSKLALKFVYLALGSFAGSFLQVSCWIVSGERQSARIRSLYLKTILRQDASFFDTETNTGEVVGRMSSDTMLIREAMGEKVGQCIQLVASFVGSFIIAFIKGWLLTLVLMSCIPPLVLASAVMSIVIAKVTTRRQVAYSAAASTAEETISSIRTVASFTGEKQAMAKYNQSLLKAYKTGVQEGVASGLGFGSVLLIAFCTYALAIWYGGKLIIEKDYTAGKIITIIFSILMGSHSLGQASPSMSSLAAGQVAAYKMFETISRRPDIDAYDTTGRKLDDIRGDIELREVRFSYPSRPDETIFNRFSLSIPSGTTVALVGQSGSGKSTVISLIERFYDPQAGEDGATDEEIKEAVDIANASKFIDMLPQGLDTMIGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESEKTVQEALDKIMINRTTVIVAHRLSTVRNAATIAVIHQGKIVEKGSHSELIKDPDGAYSQLNRLQETYSETEHNFSVETENLESTTISSRHSSERFSFRKSITQVSSVGSFSSPTKTGVAGKEDNKVTLSADTNSEQPPKIPIRRLAKLNKPEIPVLVLGTIAAVANGIILPFFGFMVSKMVNIFFEPADELRNDSRTWAYVFIALGVSSSFITPLRSYFFSVAGEKLVKRMRLMCFEKMINMEVSWFDEAENSSGALGARLSTDAASIRALVGDALGLMVQNIATAVAGVAIAFQANWQLSLIILVLLPILALNGILQLKFLQGFTADGKKLYEEASQVATDAVSSNRTVASFCAEEKVMELYKKKCEAPIKAGIKQGIISGVGFGLSFLFLFSVYACSFYAGAKLVGDGKASFSDVFRVFFALNMAAVGMSLTSTLAPDSAKAKNAAASVLAIIDRKSKVDPNDDNGLILENLKGEVEFHHVTFKYPTRPDVQIFKDLCLTIYSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIDIQKIQVTWLRQQMGLVSQEPILFNDTIRGNIAYGKGGKDATEAEIIAAAEMANAHKFISSLQQGYDTNVGERGSKLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKSADLIAVVKNGVIVEKGNHETLINNGGNYASLVALHTSTS 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211903g00002 1244 CDD ABC_MTABC3_MDL1_MDL2 1001 1237 - -
Stsc211903g00002 1244 SUPERFAMILY ABC transporter transmembrane region 55 373 IPR036640 GO:0005524|GO:0016020
Stsc211903g00002 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1239 IPR003439 GO:0005524
Stsc211903g00002 1244 FunFam ABC transporter B family member 1 659 967 - -
Stsc211903g00002 1244 Pfam ABC transporter 410 476 IPR003439 GO:0005524
Stsc211903g00002 1244 Gene3D - 449 606 IPR027417 -
Stsc211903g00002 1244 FunFam ABC transporter B family member 1 991 1241 - -
Stsc211903g00002 1244 SUPERFAMILY ABC transporter transmembrane region 661 986 IPR036640 GO:0005524|GO:0016020
Stsc211903g00002 1244 Gene3D ABC transporter type 1, transmembrane domain 47 405 IPR036640 GO:0005524|GO:0016020
Stsc211903g00002 1244 Gene3D ABC transporter type 1, transmembrane domain 647 989 IPR036640 GO:0005524|GO:0016020
Stsc211903g00002 1244 MobiDBLite consensus disorder prediction 1 43 - -
Stsc211903g00002 1244 CDD ABC_6TM_Pgp_ABCB1_D1_like 68 364 - -
Stsc211903g00002 1244 Gene3D - 406 448 IPR027417 -
Stsc211903g00002 1244 Pfam ABC transporter transmembrane region 68 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211903g00002 1244 Pfam ABC transporter transmembrane region 679 951 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211903g00002 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 391 585 IPR003439 GO:0005524
Stsc211903g00002 1244 Pfam ABC transporter 1020 1170 IPR003439 GO:0005524
Stsc211903g00002 1244 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524|GO:0016887
Stsc211903g00002 1244 FunFam ABC transporter B family member 9 55 387 - -
Stsc211903g00002 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1239 IPR027417 -
Stsc211903g00002 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 587 IPR027417 -
Stsc211903g00002 1244 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 984 - -
Stsc211903g00002 1244 Pfam ABC transporter 477 516 IPR003439 GO:0005524
Stsc211903g00002 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211903g00002 1244 PANTHER ABC TRANSPORTER B FAMILY 642 1239 IPR039421 -
Stsc211903g00002 1244 Gene3D - 992 1243 IPR027417 -
Stsc211903g00002 1244 ProSitePatterns ABC transporters family signature. 488 502 IPR017871 GO:0005524|GO:0016887
Stsc211903g00002 1244 MobiDBLite consensus disorder prediction 16 32 - -
Stsc211903g00002 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 356 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211903g00002 1244 SMART AAA_5 1028 1222 IPR003593 GO:0016887
Stsc211903g00002 1244 SMART AAA_5 418 569 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211903g00002 Stsc-Chr211903 5815 15210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211903g00002 27 588 Calmodulin-binding Proteins AT2G36910 34.483 8.64e-95 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211903g00002 K05658 - gmx:100800293 1653.26