Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211900g00001 ATGGCTGCTACTACTTCTTCTTCTTCTTTTACGAAGCACACTACTCACCACCTCAACCAAACCAAACTCCTCATGGAGCAACAACAACACCCTACCAACCATCCATATCCTAAGCTCATACGCATACGCGTCGCCGATGCCGACGCCACTGATTCCTCCAGCGACGACGAACCACCTACCCATTCCTTCACACGCCGCCGCCGACTCAAGAGCTTCGTTAACGAGATCACCATTGCCTCCTCCGCCCAACAACAACCCACCGCTTCCACCAAGAGGAAGAACAGGCCCAACTCTACAGCTCCGCCCAGCCGCCGCCGTCGTCAGTCGAAGGTCTTCTCCGGGAAGAAGTTCCGTGGAGTGAGGCAGAGACCATGGGGGAAGTGGGCTGCGGAGATAAGAGACCCTTCCCGCCGCGTTAGGCTGTGGCTGGGAACCTACGACACCGCTGAGGAAGCCGCCATGGTCTACGACAACGCCGCCATTCAGCTTCGCGGCTCCGACGCCCTCACGAACTTCATCATTCCACCGGCGCCGGAAGATAACAATTCCAGCGAAGAAGAATGCACTCCATTATTCAGCATCAGCAAGAAGAAGGAAGAGAAGAACATGCTGTCACCCACTTCTGTTCTTCTTCGGAGTTGTTCGGAAGAAACAGAATGCGCAACCGCCACCACCAGTGAAGAGCAGGAGTATCAGTCCTCCGATGAGTTGAAGAGCGAGTCGATGTTTCCGATTCCGAAGGATTCAATGTTTGAGTTTGAAACAGAGGAGTTGTTCATGAGCGATGATTTTTCAAGTGCGTTTCTGAGTTCTATTGATGAGACTCTCTTTGATTTCGGTTTGAAGAGCAGTCCCAGCTATTATAGTTGCTGGCAAACAGATTACGATGACACTTTCCAAGAAATTTCAGATTTCTTCGTCTCCGATCCTCTTGTGGCTCTCTAA 945 0.5185 MAATTSSSSFTKHTTHHLNQTKLLMEQQQHPTNHPYPKLIRIRVADADATDSSSDDEPPTHSFTRRRRLKSFVNEITIASSAQQQPTASTKRKNRPNSTAPPSRRRRQSKVFSGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIQLRGSDALTNFIIPPAPEDNNSSEEECTPLFSISKKKEEKNMLSPTSVLLRSCSEETECATATTSEEQEYQSSDELKSESMFPIPKDSMFEFETEELFMSDDFSSAFLSSIDETLFDFGLKSSPSYYSCWQTDYDDTFQEISDFFVSDPLVAL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211900g00001 314 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Stsc211900g00001 314 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Stsc211900g00001 314 MobiDBLite consensus disorder prediction 47 116 - -
Stsc211900g00001 314 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Stsc211900g00001 314 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Stsc211900g00001 314 MobiDBLite consensus disorder prediction 47 72 - -
Stsc211900g00001 314 MobiDBLite consensus disorder prediction 1 34 - -
Stsc211900g00001 314 SUPERFAMILY DNA-binding domain 116 173 IPR016177 GO:0003677
Stsc211900g00001 314 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Stsc211900g00001 314 CDD AP2 115 172 IPR001471 GO:0003700|GO:0006355
Stsc211900g00001 314 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Stsc211900g00001 314 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Stsc211900g00001 314 MobiDBLite consensus disorder prediction 74 106 - -
Stsc211900g00001 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 225 - -
Stsc211900g00001 314 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211900g00001 Stsc-Chr211900 742 1838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211900g00001 12 314 AP2-EREBP Transcription Factor Family AT4G23750 40.116 3.36e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211900g00001 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211900g00001 - - ahf:112732493 426.017