Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211898g00003 ATGATGAGTAGTGTTATGTATAGTCCTGTTCTCAAATACCCAGATGAAGTTCTAAGAAAAAACCATGAAATGGTTTCAAATAATAATAACCATCATCAACAACAACAGCAGCAAAATTCTAGATTATTGAGGTACCGTTCTGCTCCAAGTTCATTTTTGGAAAGCCTTGTTAATAACAACAATGGTGTTGGTAATGTCAATGAGGAATCTTTGAGAAATGAGGACCCTTCTTTGGGCCATGGTTGTTACCATCATATTATTCCATCCACAAGCTCAACATCATCATCATCATCGGAGACCATGTTTTCCAAGCTGATACAATCCAACAACGGATGGAGCGGCCGCGATTCGGAAGAGTATGGAGGAGGCAACAACAAACCTACTGTGGTGAAGCAAGAAACTGGGAATTCTGGTTACTCTTATTGGTCTCACCAAATTCAAAGTTTGCCACCAAATAATAATAGTAATGGTTCTTCAGCAAATGGATTTGATGGCACCTTTGGTGTTGTGAACTCTGGAAATTCAAATCACTCTACTCAATCTGAAATGGGTGTTAGGAGTTGCTCCAATCTCATCAGGCAAAAGAGTTCTCCAGCTGGATTTTTCTCCACTGAAAATGCATTGAGAGAGGCTGGGGGCTTTAGAACAATTGACGTCTCAAACGAACAACCAACTGCATCAAGTAGTGCATTACATGGACATGCTCTTTCTTTCTCACCAAATAGGCCATCCTCTTGCTTGAAACGAATGCCACATATTTCCGAATATGAAAACGAAATCCATGAAGGAACAACTGATCAAAGCATAAGAAACTTTGTAAATAACAATGGCAACTCTAAGTGCTATGTGCCTAACTTCACCGGTGAATTTTGGGACGGTTGTGCATTCAATCCCCAAAAAGCGACAAATGCAGATGAAATCATGTTCTTTGCTTCAAATGCTTTGGAATCTCAGGACTCAGACTTCTGCTCACCAAATCTTGGTTTGACCGATCATTTGAGTCTGCCTAGTTCTTCTACTAAGATGGGATCAATGGAAAAATTTCTTCAACTCCAAGGCACTGTTCCTTGCAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTACGAAGAACACGAATTAGTGAAAGAATCAAGAAATTGCATAGCCTTTTCCCGAAATCAGACAAGCAAACAAGCACAGCAGAGATGTTGGATTTGACTGTTGAGCATATTAAAGAACTACAAGAACAAGTTAAGATGCTCACAAATATTAGGTCGAAGTGCAGATGTTCAAATACTCAGAAGCAATATTCTTAA 1320 0.3985 MMSSVMYSPVLKYPDEVLRKNHEMVSNNNNHHQQQQQQNSRLLRYRSAPSSFLESLVNNNNGVGNVNEESLRNEDPSLGHGCYHHIIPSTSSTSSSSSETMFSKLIQSNNGWSGRDSEEYGGGNNKPTVVKQETGNSGYSYWSHQIQSLPPNNNSNGSSANGFDGTFGVVNSGNSNHSTQSEMGVRSCSNLIRQKSSPAGFFSTENALREAGGFRTIDVSNEQPTASSSALHGHALSFSPNRPSSCLKRMPHISEYENEIHEGTTDQSIRNFVNNNGNSKCYVPNFTGEFWDGCAFNPQKATNADEIMFFASNALESQDSDFCSPNLGLTDHLSLPSSSTKMGSMEKFLQLQGTVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLHSLFPKSDKQTSTAEMLDLTVEHIKELQEQVKMLTNIRSKCRCSNTQKQYS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211898g00003 439 CDD bHLH_AtbHLH_like 370 422 IPR045239 -
Stsc211898g00003 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 431 IPR036638 GO:0046983
Stsc211898g00003 439 MobiDBLite consensus disorder prediction 108 136 - -
Stsc211898g00003 439 Gene3D - 367 438 IPR036638 GO:0046983
Stsc211898g00003 439 SMART finulus 371 421 IPR011598 GO:0046983
Stsc211898g00003 439 MobiDBLite consensus disorder prediction 141 160 - -
Stsc211898g00003 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 415 IPR011598 GO:0046983
Stsc211898g00003 439 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 432 - -
Stsc211898g00003 439 Pfam Helix-loop-helix DNA-binding domain 370 416 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211898g00003 Stsc-Chr211898 23543 28357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211898g00003 32 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 31.643 4.65e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211898g00003 HLH 5.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211898g00003 - - adu:107462676 566.614