Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211897g00005 | ATGGATTCCACATTTGGAGGAGGAGGTGGTGATGTTAGTTATGCCACTACACTTTATACATATAGCACTACAATAAACACAAAACCTTCATCAATCGACAAGCGATGCCCTCCTTTGACCGCCATAGACAGATTCTTATGTAATCAGCATGATGAGGAAGCACATAACAATGATATTATTGCAATGAACAACAACAACATTGCAAATGTCTTTGCTGATGAGAATTATTTATGTGGAGAATTTATGTGGCCAAATTACAATGAAGAATCAAGCTTTTTTGATGGACTATTCCTTGCAAATGATGAAAAAGAAGCTTTGAAGTGGAGAAGCATGCCCCATCAAAACCCTACATTGTGCATGAAAGAAAACGTGCCAATTTTGAACAAGAGTGCTAAAGGATCAAAGGCTACTGAGAAAGTGTCTAATAGTTCTGGTTGGATAAAAGGAACATGGGCTGAAGAAGAAGACAGGAATTTGATTGAGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATTGCTGAGAAGTTGGATGGAAGATCAGGCAAACAGTGTAGAGAAAGATGGAATAATCATTTGCGTCCTGATATCAAGAAGACTAGTTGGAGTGAAGAGGAAGAGAGAATGTTAGTAGAAAGACATGCAAAAGTTGGAAACCGTTGGGCTGTGATAGCAAAGTGCATCCCTGGAAGAACCGAAAATGATTACATAAGAAGCAAAACAAACACTACTACTACTACTGTGTTATCTGAAGAACCTTCTAGAGATTCTGTTTCCAATAATGATGAGCTACTCTTCATGGAACAGGTTTTCAATCACAATAATAACAATGACATCATGCAATTATTTGATGATACTGATCTTTTTGTTTCAAGAGACGATTATTATGTTCCCAACAACAATGATAATGTGACTATGGTTGGAACCAAAGCCTTAACATGA | 945 | 0.3725 | MDSTFGGGGGDVSYATTLYTYSTTINTKPSSIDKRCPPLTAIDRFLCNQHDEEAHNNDIIAMNNNNIANVFADENYLCGEFMWPNYNEESSFFDGLFLANDEKEALKWRSMPHQNPTLCMKENVPILNKSAKGSKATEKVSNSSGWIKGTWAEEEDRNLIELVKQYGERKWAQIAEKLDGRSGKQCRERWNNHLRPDIKKTSWSEEEERMLVERHAKVGNRWAVIAKCIPGRTENDYIRSKTNTTTTTVLSEEPSRDSVSNNDELLFMEQVFNHNNNNDIMQLFDDTDLFVSRDDYYVPNNNDNVTMVGTKALT | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211897g00005 | 314 | Gene3D | - | 147 | 199 | - | - | |
Stsc211897g00005 | 314 | PANTHER | MYB PROTEIN-RELATED | 125 | 247 | - | - | |
Stsc211897g00005 | 314 | ProSiteProfiles | Myb-like domain profile. | 195 | 236 | IPR001005 | - | |
Stsc211897g00005 | 314 | SUPERFAMILY | Homeodomain-like | 146 | 236 | IPR009057 | - | |
Stsc211897g00005 | 314 | FunFam | Transcriptional activator Myb isoform A | 147 | 200 | - | - | |
Stsc211897g00005 | 314 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 199 | 250 | IPR017930 | - | |
Stsc211897g00005 | 314 | SMART | sant | 199 | 248 | IPR001005 | - | |
Stsc211897g00005 | 314 | SMART | sant | 147 | 196 | IPR001005 | - | |
Stsc211897g00005 | 314 | Pfam | Myb-like DNA-binding domain | 151 | 211 | - | - | |
Stsc211897g00005 | 314 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 148 | 198 | IPR017930 | - | |
Stsc211897g00005 | 314 | Gene3D | - | 202 | 244 | - | - | |
Stsc211897g00005 | 314 | CDD | SANT | 150 | 194 | IPR001005 | - | |
Stsc211897g00005 | 314 | ProSiteProfiles | Myb-like domain profile. | 148 | 194 | IPR001005 | - | |
Stsc211897g00005 | 314 | CDD | SANT | 202 | 236 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211897g00005 | Stsc-Chr211897 | 35945 | 38725 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211897g00005 | 36 | 235 | MYB Transcription Factor Family | AT5G58850 | 42.788 | 2.33e-45 | 157 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Stsc211897g00005 | Myb_DNA-bind_6 | 3.9e-19 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211897g00005 | K09422 | - | gmx:100786295 | 219.55 |