Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211897g00005 ATGGATTCCACATTTGGAGGAGGAGGTGGTGATGTTAGTTATGCCACTACACTTTATACATATAGCACTACAATAAACACAAAACCTTCATCAATCGACAAGCGATGCCCTCCTTTGACCGCCATAGACAGATTCTTATGTAATCAGCATGATGAGGAAGCACATAACAATGATATTATTGCAATGAACAACAACAACATTGCAAATGTCTTTGCTGATGAGAATTATTTATGTGGAGAATTTATGTGGCCAAATTACAATGAAGAATCAAGCTTTTTTGATGGACTATTCCTTGCAAATGATGAAAAAGAAGCTTTGAAGTGGAGAAGCATGCCCCATCAAAACCCTACATTGTGCATGAAAGAAAACGTGCCAATTTTGAACAAGAGTGCTAAAGGATCAAAGGCTACTGAGAAAGTGTCTAATAGTTCTGGTTGGATAAAAGGAACATGGGCTGAAGAAGAAGACAGGAATTTGATTGAGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATTGCTGAGAAGTTGGATGGAAGATCAGGCAAACAGTGTAGAGAAAGATGGAATAATCATTTGCGTCCTGATATCAAGAAGACTAGTTGGAGTGAAGAGGAAGAGAGAATGTTAGTAGAAAGACATGCAAAAGTTGGAAACCGTTGGGCTGTGATAGCAAAGTGCATCCCTGGAAGAACCGAAAATGATTACATAAGAAGCAAAACAAACACTACTACTACTACTGTGTTATCTGAAGAACCTTCTAGAGATTCTGTTTCCAATAATGATGAGCTACTCTTCATGGAACAGGTTTTCAATCACAATAATAACAATGACATCATGCAATTATTTGATGATACTGATCTTTTTGTTTCAAGAGACGATTATTATGTTCCCAACAACAATGATAATGTGACTATGGTTGGAACCAAAGCCTTAACATGA 945 0.3725 MDSTFGGGGGDVSYATTLYTYSTTINTKPSSIDKRCPPLTAIDRFLCNQHDEEAHNNDIIAMNNNNIANVFADENYLCGEFMWPNYNEESSFFDGLFLANDEKEALKWRSMPHQNPTLCMKENVPILNKSAKGSKATEKVSNSSGWIKGTWAEEEDRNLIELVKQYGERKWAQIAEKLDGRSGKQCRERWNNHLRPDIKKTSWSEEEERMLVERHAKVGNRWAVIAKCIPGRTENDYIRSKTNTTTTTVLSEEPSRDSVSNNDELLFMEQVFNHNNNNDIMQLFDDTDLFVSRDDYYVPNNNDNVTMVGTKALT 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211897g00005 314 Gene3D - 147 199 - -
Stsc211897g00005 314 PANTHER MYB PROTEIN-RELATED 125 247 - -
Stsc211897g00005 314 ProSiteProfiles Myb-like domain profile. 195 236 IPR001005 -
Stsc211897g00005 314 SUPERFAMILY Homeodomain-like 146 236 IPR009057 -
Stsc211897g00005 314 FunFam Transcriptional activator Myb isoform A 147 200 - -
Stsc211897g00005 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 250 IPR017930 -
Stsc211897g00005 314 SMART sant 199 248 IPR001005 -
Stsc211897g00005 314 SMART sant 147 196 IPR001005 -
Stsc211897g00005 314 Pfam Myb-like DNA-binding domain 151 211 - -
Stsc211897g00005 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 198 IPR017930 -
Stsc211897g00005 314 Gene3D - 202 244 - -
Stsc211897g00005 314 CDD SANT 150 194 IPR001005 -
Stsc211897g00005 314 ProSiteProfiles Myb-like domain profile. 148 194 IPR001005 -
Stsc211897g00005 314 CDD SANT 202 236 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211897g00005 Stsc-Chr211897 35945 38725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211897g00005 36 235 MYB Transcription Factor Family AT5G58850 42.788 2.33e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211897g00005 Myb_DNA-bind_6 3.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211897g00005 K09422 - gmx:100786295 219.55