Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211894g00001 ATGAATTCATACCTCCGTGTGCAGGGGACTCCGGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGATCCAGATGTCTGTTGGATTGATGGACAGGTATCAAAAATCACAGGAAAGGATGCCGAAATTGAAACTACCAATGGAAAAAAGGTGGTTGCAAATTTATCAAAAATATATCCAAAAGATATGGAAGCTCCTCCTGGTGGAGTGGATGATATGACTAAGTTGTCCTATTTACATGAACCTGGAGTCCTGGAGAACTTGAAAACTAGATACGAATTGAATGAAATATATACTTACACTGGAAATATTCTGATTGCAATAAATCCATTTCAAAAACTACCACATATCTATGGTGCGCACATGATGCAGCAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCTGTTGCTGATGTTGCATATAGGGCAATGATTAATGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACCACAAAAATGCTTATGCAATTTCTTGCCTACTTAGGTGGTAGGGCTGGCACAGAAGGCCGAACAGTTGAACAACAAGTTCTTGAGTCAAATCCAGTTTTAGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCTAGTCGTTTTGGTAAATTTGTGGAGATCCAATTTGATAAAAGTGGAAGAATCTCAGGAGCAGCCATCAGAACGTACCTTCTAGAGAGGTCTCGGGTTTGCCAAGTTAATGATCCAGAACGCAACTATCACTGCTTTTATCTTCTTTGTGCCGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAGTCCTAAAACTTTTCACTACCTTAACCAGTCAAAATGTTATGAACTGGCTGACGTAAGTGATGCTCGTGAATTTCTTGCCACCCGGAGAGCTATGGATATTGTTGGAATCAGCCAAAAGGATCAGGAAGCCATTTTTAGAGTTGTTGCTTCAATTCTCCATCTTGGTAATATTGATTTTACCAAAGGAAAAGAAGTTGACTCATCAGTTCCAAAAGATGACAAAGCCAAATTCCACCTTCAGACTACTGCTGAGCTTCTAATGTGTGATGCTGAGGCTTTGCAAGATGCATTATGTAAGCGTGTTATGATCACCCCTGAAGAAGTTATAAAACGGAGCCTTGATCCCCAAAGTGCTACAGTGAGTAGAGATGGACTGGCAAAAACAATTTATTCTCGGCTGTTTGACTGGTTGGTGGACAAGATTAATAATTCAATTGGACAGGACCCCACTTCTAAAACTTTGATAGGAGTCCTTGACATATATGGTTTTGAAAGTTTTAAGACTAACAGTTTTGAACAGTTTTGCATTAATTTCACAAATGAGAAGTTGCAACAGCATTTCAATCAGCACGTTTTTAAAATGGAACAAGAAGAATATACAAAGGAGAAAATTAACTGGAGCTACATTGAATTTGTTGACAATCAAGATGTTTTAGACCTTATTGAAAAGAAACCCGGAGGAATCATTGCTCTCCTAGATGAAGCTTGCATGTTTCCAAAGTCTACGCATGAAACTTTTGCAAACAAACTTTATCAAACATTTAAGAGCCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACAGATTTCACAGTTGCTCATTATGCTGGGGAGGTGTTATACCAGTCTGACCAATTTCTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTGTTGAGTGCTTCCAAATGTCCTTTTGTAGCTGGCCTTTTTCCACCACTTCCAGAAGAGACATCAAAATCTTCCAAATTTTCTTCAATTGGCTCTCGTTTTAAGCTACAACTACAAAGTCTAATGGAGACATTAAATTCTACAGAACCCCATTACATCAGATGTGTGAAACCAAATAACCTCTTGAAGCCTGCTATTTTTGAGAATGCCAACATTATGCAACAGCTCCGCTGTGGTGGTGTTTTAGAGGCAATCCGAATCAGTTGTGCCGGCTATCCTACTCGCCGTGCTTTTTTTGAATTTGTGAACAGATTTGGCCTTCTTGCTCCAGAGGCCACAGAAGCAAACTATGACGAAAAGACTGCTTGCCAAAAGATTCTGGAAAAGATGGGGCTTAATGGATATCAGATTGGAACGACAAAGGTATTTCTAAGAGCAGGCCAGATGGCTCAACTAGATGCATGTAGATCTCAAGTACTCAGTAATGCAGCAAAAATTATCCAACGGCGCATAAGAACCCATCAAGCTCGTAATCATTATCTGGCGCTTCGAAAGAAGACCATATATCTGCAGTCTTGGTGGAGAGGAAGACTTGCATGCAAACTATATGAGAACATGAGAAAGGAGGCTGCTGCCATTAAAATTCAAAAGCACACACGCAGATACCAAGCTTGTAAAGCCTACAAGAAACTTCATGTGTCAGCATTGACAGTTCAAACAGCTTTAAGGGCAACCGCTGCTCGCAAGGAGTTCAGATTTAGGAAGCAGACCAAAGCCTCCATTGTTATTCAGGCTCGGTGGCGGTGCCACAAAGCTGCATTATATTATAAGAGGCTCAAGAAAGGGACAATAGTTACACAATGCAGATGGAGGGGACGTGTGGCAAGAAGAGAACTTAGGAAACTAAAAATGGCTGCAAGAGAAACTGGTGCGCTTCAAGAAGCAAAGGATAAGCTTGAAAAACGTGTGGAGGAACTCACTTGGCGTCTCCAGCTAGAAAAAGGATTAAGGACCAATCTAGAAGAATCTAAAGCTCAAGAGATAGCAAAACTACAGAATCAATTACAGGAGATGCAAAGCAAATTTGAGGAGACTAATGTTCTTCTTGCCAAGGAGCGAGAGAAT 2871 0.4023 MNSYLRVQGTPVNIIVGSHVWIEDPDVCWIDGQVSKITGKDAEIETTNGKKVVANLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLENLKTRYELNEIYTYTGNILIAINPFQKLPHIYGAHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMQFLAYLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGSPKTFHYLNQSKCYELADVSDAREFLATRRAMDIVGISQKDQEAIFRVVASILHLGNIDFTKGKEVDSSVPKDDKAKFHLQTTAELLMCDAEALQDALCKRVMITPEEVIKRSLDPQSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPTSKTLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEKINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFIKPKLSRTDFTVAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENANIMQQLRCGGVLEAIRISCAGYPTRRAFFEFVNRFGLLAPEATEANYDEKTACQKILEKMGLNGYQIGTTKVFLRAGQMAQLDACRSQVLSNAAKIIQRRIRTHQARNHYLALRKKTIYLQSWWRGRLACKLYENMRKEAAAIKIQKHTRRYQACKAYKKLHVSALTVQTALRATAARKEFRFRKQTKASIVIQARWRCHKAALYYKRLKKGTIVTQCRWRGRVARRELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKLQNQLQEMQSKFEETNVLLAKEREN 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211894g00001 957 PANTHER MYOSIN 61 936 - -
Stsc211894g00001 957 SMART iq_5 764 786 IPR000048 GO:0005515
Stsc211894g00001 957 SMART iq_5 812 834 IPR000048 GO:0005515
Stsc211894g00001 957 SMART iq_5 860 882 IPR000048 GO:0005515
Stsc211894g00001 957 SMART iq_5 741 763 IPR000048 GO:0005515
Stsc211894g00001 957 SMART iq_5 789 811 IPR000048 GO:0005515
Stsc211894g00001 957 SMART iq_5 837 859 IPR000048 GO:0005515
Stsc211894g00001 957 Gene3D Myosin VI head, motor domain, U50 subdomain 319 608 - -
Stsc211894g00001 957 Coils Coil 919 957 - -
Stsc211894g00001 957 Gene3D - 674 737 - -
Stsc211894g00001 957 SMART MYSc_2a 64 740 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 FunFam unconventional myosin-Va 793 840 - -
Stsc211894g00001 957 ProSiteProfiles IQ motif profile. 838 865 IPR000048 GO:0005515
Stsc211894g00001 957 CDD MYSc_Myo11 83 727 IPR036018 -
Stsc211894g00001 957 Pfam IQ calmodulin-binding motif 744 762 IPR000048 GO:0005515
Stsc211894g00001 957 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Stsc211894g00001 957 Pfam IQ calmodulin-binding motif 766 781 IPR000048 GO:0005515
Stsc211894g00001 957 Pfam IQ calmodulin-binding motif 839 859 IPR000048 GO:0005515
Stsc211894g00001 957 Pfam IQ calmodulin-binding motif 863 882 IPR000048 GO:0005515
Stsc211894g00001 957 FunFam Class V myosin 446 584 - -
Stsc211894g00001 957 Pfam Myosin N-terminal SH3-like domain 16 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 Gene3D - 259 317 - -
Stsc211894g00001 957 ProSiteProfiles IQ motif profile. 742 769 IPR000048 GO:0005515
Stsc211894g00001 957 FunFam Myosin heavy chain 259 314 - -
Stsc211894g00001 957 FunFam unconventional myosin-Va 841 888 - -
Stsc211894g00001 957 ProSiteProfiles Myosin motor domain profile. 69 739 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 Pfam Myosin head (motor domain) 71 727 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 15 64 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Stsc211894g00001 957 Coils Coil 884 911 - -
Stsc211894g00001 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 792 IPR027417 -
Stsc211894g00001 957 Gene3D - 840 889 - -
Stsc211894g00001 957 Gene3D - 741 791 - -
Stsc211894g00001 957 Gene3D - 792 839 - -
Stsc211894g00001 957 Gene3D Kinesin motor domain 72 669 IPR036961 -
Stsc211894g00001 957 ProSiteProfiles IQ motif profile. 790 819 IPR000048 GO:0005515
Stsc211894g00001 957 PRINTS Myosin heavy chain signature 203 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 PRINTS Myosin heavy chain signature 156 181 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 PRINTS Myosin heavy chain signature 99 118 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 PRINTS Myosin heavy chain signature 436 464 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 PRINTS Myosin heavy chain signature 489 517 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211894g00001 957 ProSiteProfiles IQ motif profile. 861 890 IPR000048 GO:0005515
Stsc211894g00001 957 FunFam unconventional myosin-Va 744 792 - -
Stsc211894g00001 957 Gene3D - 446 630 - -
Stsc211894g00001 957 FunFam Myosin 2 319 436 - -
Stsc211894g00001 957 ProSiteProfiles IQ motif profile. 813 842 IPR000048 GO:0005515
Stsc211894g00001 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 792 890 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211894g00001 Stsc-Chr211894 27 7162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211894g00001 9 951 Myosins gene family AT1G08730 83.457 0.0 1686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211894g00001 K10357 - gmx:100816792 1748.41