Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211889g00005 ATGGCAACCGAAACAGCAGGAGTAGTAGCTGAATTATCCACGGCGGCGCCCGTTCCTTCGCCGGCGCCGGAGGCTGGATTGAAACACAAGCTGGAGAGGAAGTGGACGTTCTGGTTCGACAACCAATCGAAGCCGAAGCAAGGCGCCGCTTGGGGCACCTCTCTCCGCGAGGTTTACACCTTCGATACTGTCGAAGAGTTCTGGTGTTTGTATGATCAGGTATTCAAGCCCAGCAAATTGCCTGGTAACGCAGACTTCCATTTGTTCAAGACTGGGATTGAGCCGAAATGGGAAGATCCCGAATGTGCAAAGGGAGGCAAGTGGACTGTTACGAGCAACAGGAAGGCTAATCTTGATAGCATGTGGCTTGACACAATGATGGCTTTGATCGGGGAGCAATTTGAAGATGCTGAGGACATATGCGGTGTGGTTGCAAGTGTGCGCCAGAGGCAGGACAAACTTTCGCTATGGACAAAGACCGCAGCAAACGAAGCAGCCCAGATGGGCATCGGAAGGAAGTGGAAGGAGATCATTGATGTTACTGACAAGATAATATATAACTTTCATGATGATTCTAGAACTCGATCATCGAAGAGTCGGTACAATGTATAA 612 0.4984 MATETAGVVAELSTAAPVPSPAPEAGLKHKLERKWTFWFDNQSKPKQGAAWGTSLREVYTFDTVEEFWCLYDQVFKPSKLPGNADFHLFKTGIEPKWEDPECAKGGKWTVTSNRKANLDSMWLDTMMALIGEQFEDAEDICGVVASVRQRQDKLSLWTKTAANEAAQMGIGRKWKEIIDVTDKIIYNFHDDSRTRSSKSRYNV 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211889g00005 203 FunFam Eukaryotic translation initiation factor 4E 20 203 - -
Stsc211889g00005 203 ProSitePatterns Eukaryotic initiation factor 4E signature. 85 108 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Stsc211889g00005 203 Gene3D RNA Cap, Translation Initiation Factor Eif4e 23 203 IPR023398 -
Stsc211889g00005 203 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 23 196 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc211889g00005 203 SUPERFAMILY eIF4e-like 11 198 IPR023398 -
Stsc211889g00005 203 Pfam Eukaryotic initiation factor 4E 30 183 IPR001040 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211889g00005 Stsc-Chr211889 18423 21958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211889g00005 17 203 Eukaryotic Initiation Factors Gene Family AT5G35620 65.816 2.15e-88 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211889g00005 K03259 - gmx:100781892 342.813