Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211887g00011 ATGACTCAACCTTCTTCAAATTCATCAACACGCTCCCCTAAGAAACAGAGCACCCCCAAGAAGCCCCGAGACTGCAGCAAGCACCCGCTCTACCACGGCGTGCGAATGCGAAATTGGGGAAAATGGGTCTCCGAAATCCGGGAGCCTCGCAAGAAGTCTCGAATCTGGCTCGGCACCTTCGCCACCCCCGAAATGGCGGCGCGTGCGCACGACGTCGCCGCCTTGTGCATTAAGGGAAAAGCAGCCATTCTTAACTTCCCAAAGATTGCTAAATTGCTCCCTAGACCTGTCACGCCGACTCCACGTGACATCCAGGCGGCGGCCGCGGAAGCCGCTGCCATGGTGAAGTTCGACTCTGAAGAAGGAACAGAGTCGTCTGAGCTTAGTGAGATTGTTGAGCTGCCAAATATAGAAGAAGAGAGCTTTGACTCGGGAACTGAGTTCATGGTTCTTGACTCGGTGGATAGTTGGGTGTTCCCTTCCAGTTTGTCTGAAATGATGATGATGTTTGGAACACAAGACATGTCTGCCTCTGACTCTGATGAGTGTGTGGTTCCAATTTGGGGTTCTGTTTAG 576 0.526 MTQPSSNSSTRSPKKQSTPKKPRDCSKHPLYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALCIKGKAAILNFPKIAKLLPRPVTPTPRDIQAAAAEAAAMVKFDSEEGTESSELSEIVELPNIEEESFDSGTEFMVLDSVDSWVFPSSLSEMMMMFGTQDMSASDSDECVVPIWGSV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211887g00011 191 MobiDBLite consensus disorder prediction 1 15 - -
Stsc211887g00011 191 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Stsc211887g00011 191 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Stsc211887g00011 191 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Stsc211887g00011 191 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Stsc211887g00011 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 143 - -
Stsc211887g00011 191 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Stsc211887g00011 191 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Stsc211887g00011 191 MobiDBLite consensus disorder prediction 1 30 - -
Stsc211887g00011 191 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
Stsc211887g00011 191 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Stsc211887g00011 191 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211887g00011 Stsc-Chr211887 37573 38148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211887g00011 5 160 AP2-EREBP Transcription Factor Family AT5G11590 51.892 4.37e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211887g00011 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211887g00011 - K09286 gmx:100804056 229.565