Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211887g00003 ATGGCGGAATACTTCATGGCGGGATATTTCGCCGTCACACCCGACGAACTCTCGCCGGAGAAGCGTCACGCTGACCAGAAGCCCGGCGAGGTTTTCACCATTGATGACCTTCTCGACTTCTCCAACGCCAACGCCGACTCTATCACATCCGACGGATTTTTCAACAATACCGCCGGAAACTCCACCGACGTCTCTGTCGTCACCGCCGTCGACAGCTGTAACTCCTCCATTTCCGGCAGCAGCTTCCGTTGCTTCGCCGCCGTGGATCCTCAGTTCTCCTCAGAGTTCTGCGTTCCGTATGAGGACATGGCGGAACTCGAATGGCTCTCGAATTTCGTTGAAGAGTCGTTTCCGGCAGAGGAGGAGCTGAAAACTCTGCACCTTATCTCCGGCGTGAAGCCTCAGACTGAGACACCTCAGTCTTCTTCTTCGTCGGATGCTCGAAACTCGCCGCTATTCCACCCCGAGACGCCGCTCCCGGCGAAGGCAAGAAGCAAGCGCTCCCGCGCCGCGCCGGGAGATTGGTCCACGCGCGTGGTTCGCGTCGTTAAAGCGGACGCAGAACAAAGGCCCGCGAAGAAGAGAGACGGGCCGGATTCCGAACCATCGGGCCGAAAATGCCTGCACTGCGCGGCTGAACAGACGCCGCAGTGGCGAACTGGGCCCATGGGCCCAAAGACATTGTGCAATGCGTGTGGAGTAAGGTATAAGTCTGGGAGGCTGGTGCCGGAGTACAGGCCCGCGGCAAGCCCAACGTTCTTGTCGACGAGGCATTCAAATTCGCATAGGAAGGTGTTGGAGCTGAGGAGGCAGAAGGAGATGCATAATCACCGTTTGATTAGTCAGAGTTCCGTTTTCGACGTATCCAACGGTGGAGATTCGTTCTTGATCCATCACAATAACCGTCCTGATTGTAGGAACGTCTAA 927 0.5674 MAEYFMAGYFAVTPDELSPEKRHADQKPGEVFTIDDLLDFSNANADSITSDGFFNNTAGNSTDVSVVTAVDSCNSSISGSSFRCFAAVDPQFSSEFCVPYEDMAELEWLSNFVEESFPAEEELKTLHLISGVKPQTETPQSSSSSDARNSPLFHPETPLPAKARSKRSRAAPGDWSTRVVRVVKADAEQRPAKKRDGPDSEPSGRKCLHCAAEQTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFLSTRHSNSHRKVLELRRQKEMHNHRLISQSSVFDVSNGGDSFLIHHNNRPDCRNV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211887g00003 308 Gene3D - 202 251 IPR013088 GO:0006355|GO:0008270
Stsc211887g00003 308 ProSiteProfiles GATA-type zinc finger domain profile. 201 237 IPR000679 GO:0006355|GO:0043565
Stsc211887g00003 308 FunFam GATA transcription factor 197 282 - -
Stsc211887g00003 308 CDD ZnF_GATA 206 253 IPR000679 GO:0006355|GO:0043565
Stsc211887g00003 308 PIRSF Txn_fac_GATA_plant 16 292 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc211887g00003 308 PANTHER GATA TRANSCRIPTION FACTOR 22 277 - -
Stsc211887g00003 308 ProSitePatterns GATA-type zinc finger domain. 207 232 IPR000679 GO:0006355|GO:0043565
Stsc211887g00003 308 MobiDBLite consensus disorder prediction 131 151 - -
Stsc211887g00003 308 MobiDBLite consensus disorder prediction 131 205 - -
Stsc211887g00003 308 MobiDBLite consensus disorder prediction 181 203 - -
Stsc211887g00003 308 Pfam GATA zinc finger 207 240 IPR000679 GO:0006355|GO:0043565
Stsc211887g00003 308 SMART GATA_3 201 251 IPR000679 GO:0006355|GO:0043565
Stsc211887g00003 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211887g00003 Stsc-Chr211887 10024 11322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211887g00003 32 308 C2C2-Gata Transcription Factor Family AT4G32890 47.284 4.47e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc211887g00003 GATA 2.5e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211887g00003 - - qsa:O6P43_018201 407.527